gmteunisse / fantaxtic
Fantaxtic - Nested Bar Plots for Phyloseq Data
☆28Updated 7 months ago
Alternatives and similar repositories for fantaxtic:
Users that are interested in fantaxtic are comparing it to the libraries listed below
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated last year
- ☆49Updated 4 years ago
- Transform files to the microtable object with microeco package☆24Updated 2 months ago
- ☆52Updated this week
- ☆14Updated this week
- Compare different differential abundance and expression methods☆51Updated 2 years ago
- dada2 formatted nifH database☆11Updated 8 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- Various functions for analysis of microbial community data☆43Updated 2 years ago
- Speedy versions of phyloseq functions☆46Updated 9 months ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 6 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆63Updated last year
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆15Updated last year
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆31Updated 2 weeks ago
- A set of R scripts for the analysis of microbial profiles☆42Updated 8 months ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆42Updated 3 months ago
- ☆14Updated 10 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- ☆12Updated 3 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆31Updated 7 years ago
- ☆48Updated 10 months ago
- JAMP - Just Another Metabarcoding Pipeline☆32Updated 3 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated last year