jeffersonfparil / compare_genomesLinks
A comparative genomics workflow using Nextflow, conda, Julia and R
☆45Updated last year
Alternatives and similar repositories for compare_genomes
Users that are interested in compare_genomes are comparing it to the libraries listed below
Sorting:
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆57Updated last week
- paml documentation and tutorials☆61Updated 4 months ago
- HyPhy standalone analyses☆46Updated 3 weeks ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆39Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Best practices and workflow for genome annotation☆78Updated 5 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆82Updated 2 weeks ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- A program for detection of tRNA genes☆67Updated 2 years ago
- ☆32Updated 4 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- orthology assignment using phylogenetic and network analyses☆47Updated 6 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated last year
- Scripting analyses of genomes in Ensembl Plants☆40Updated last week
- A Nextflow pipeline for evaluating assembly quality☆37Updated this week
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆73Updated 4 years ago
- ☆79Updated 2 months ago
- Synteny Imager☆64Updated last month
- Multi-genome synteny block visualization tool☆44Updated 7 months ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago