Alternatives and similar repositories for single-cell-tutorial

Users that are interested in single-cell-tutorial are comparing it to the libraries listed below

• theislab / single-cell-best-practices
  https://www.sc-best-practices.org
  ☆1,113Updated last week
• mdozmorov / scRNA-seq_notes
  A list of scRNA-seq analysis tools
  ☆771Updated 2 weeks ago
• hbctraining / scRNA-seq
  ☆600Updated 4 years ago
• hbctraining / Intro-to-scRNAseq
  ☆643Updated last week
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,065Updated 4 years ago
• hemberg-lab / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆677Updated 3 years ago
• Starlitnightly / omicverse
  A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
  ☆829Updated this week
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆887Updated 2 weeks ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆838Updated last year
• crazyhottommy / scRNAseq-analysis-notes
  scRNAseq analysis notes from Ming Tang
  ☆772Updated last year
• nf-core / rnaseq
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
  ☆1,179Updated 2 weeks ago
• seandavi / awesome-single-cell
  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
  ☆3,633Updated 2 weeks ago
• sqjin / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆758Updated 2 years ago
• mousepixels / sanbomics_scripts
  scripts and notebooks from sanbomics
  ☆461Updated last year
• aertslab / pySCENIC
  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…
  ☆572Updated 6 months ago
• griffithlab / rnaseq_tutorial
  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…
  ☆1,412Updated 2 years ago
• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆618Updated last month
• YuLab-SMU / clusterProfiler
  A universal enrichment tool for interpreting omics data
  ☆1,155Updated this week
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆650Updated 2 months ago
• scverse / scvi-tools
  Deep probabilistic analysis of single-cell and spatial omics data
  ☆1,538Updated this week
• zqfang / GSEApy
  Gene Set Enrichment Analysis in Python
  ☆687Updated last month
• MareesAT / GWA_tutorial
  A comprehensive tutorial about GWAS and PRS
  ☆959Updated 2 years ago
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆609Updated 2 months ago
• satijalab / seurat
  R toolkit for single cell genomics
  ☆2,614Updated last week
• jmzeng1314 / GEO
  ☆859Updated 3 years ago
• agitter / single-cell-pseudotime
  An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
  ☆436Updated 2 weeks ago
• crazyhottommy / getting-started-with-genomics-tools-and-resources
  Unix, R and python tools for genomics and data science
  ☆1,354Updated 4 months ago
• theislab / scvelo
  RNA Velocity generalized through dynamical modeling
  ☆484Updated last month
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆450Updated 8 years ago
• pachterlab / BI-BE-CS-183-2023
  Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
  ☆514Updated last week