Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
☆1,578Dec 11, 2022Updated 3 years ago
Alternatives and similar repositories for single-cell-tutorial
Users that are interested in single-cell-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,808Updated this week
- https://www.sc-best-practices.org☆1,226Updated this week
- Single-cell analysis in Python. Scales to >100M cells.☆2,522Updated this week
- Analysis of single cell RNA-seq data course☆682Apr 11, 2022Updated 4 years ago
- R toolkit for single cell genomics☆2,770Jul 14, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scRNAseq analysis notes from Ming Tang☆821Dec 2, 2024Updated last year
- A list of scRNA-seq analysis tools☆808Updated this week
- Deep probabilistic analysis of single-cell and spatial omics data☆1,663Updated this week
- Benchmarking analysis of data integration tools☆425Apr 27, 2026Updated 2 months ago
- ☆614Mar 23, 2021Updated 5 years ago
- CellRank: dynamics from multi-view single-cell data☆454Updated this week
- A package to help convert different single-cell data formats to each other☆473Feb 20, 2026Updated 5 months ago
- RNA Velocity generalized through dynamical modeling☆507Feb 25, 2026Updated 4 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆794Jan 6, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- Inferring CNV from Single-Cell RNA-Seq☆677Nov 14, 2025Updated 8 months ago
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- ☆364Dec 9, 2021Updated 4 years ago
- Single RNA-seq data analysis with R (Finland, May, 2019)☆231Aug 1, 2022Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆665Jun 5, 2026Updated last month
- Table of software for the analysis of single-cell RNA-seq data.☆341Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- Reference mapping for single-cell genomics☆406Jun 26, 2026Updated 3 weeks ago
- An interactive explorer for single-cell transcriptomics data☆782Updated this week
- Scanpy Tutorials.☆241Jul 14, 2026Updated last week
- 10x Genomics Single Cell Analysis☆470Dec 10, 2025Updated 7 months ago
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 9 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆624Jun 26, 2025Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆346Jul 28, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Formalizing and benchmarking open problems in single-cell genomics☆437Jun 30, 2026Updated 3 weeks ago
- Bench-marking classification tools for scRNA-seq data☆196Jun 9, 2022Updated 4 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆312Mar 6, 2023Updated 3 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆490Apr 5, 2024Updated 2 years ago
- RNAseq analysis notes from Ming Tang☆1,093Nov 15, 2021Updated 4 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆246May 23, 2020Updated 6 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆94Aug 26, 2020Updated 5 years ago