theislab / single-cell-tutorialLinks
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
☆1,480Updated 2 years ago
Alternatives and similar repositories for single-cell-tutorial
Users that are interested in single-cell-tutorial are comparing it to the libraries listed below
Sorting:
- https://www.sc-best-practices.org☆918Updated last week
- ☆565Updated 4 years ago
- A list of scRNA-seq analysis tools☆702Updated this week
- Analysis of single cell RNA-seq data course☆674Updated 3 years ago
- ☆595Updated last month
- ChIP-seq analysis notes from Ming Tang☆802Updated 10 months ago
- List of software packages for multi-omics analysis☆801Updated last month
- RNAseq analysis notes from Ming Tang☆1,012Updated 3 years ago
- scRNAseq analysis notes from Ming Tang☆706Updated 6 months ago
- scripts and notebooks from sanbomics☆409Updated 6 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,037Updated this week
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆641Updated this week
- Inferring CNV from Single-Cell RNA-Seq☆616Updated 4 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆500Updated last year
- A universal enrichment tool for interpreting omics data☆1,094Updated last month
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆425Updated 2 weeks ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆411Updated last month
- A collection of tools for Hi-C data analysis☆588Updated 2 weeks ago
- Gene Set Enrichment Analysis in Python☆632Updated this week
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆504Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆490Updated last month
- RNA Velocity generalized through dynamical modeling☆447Updated 3 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆700Updated last year
- Collections of library structure and sequence of popular single cell genomic methods☆467Updated 2 weeks ago
- ENCODE ATAC-seq pipeline☆420Updated 10 months ago
- 10x Genomics Single Cell Analysis☆412Updated 3 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆473Updated 2 months ago
- Intro to ChIPseq using HPC☆307Updated 2 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆421Updated 3 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆743Updated last month