Bioconductor / OrchestratingSingleCellAnalysis-releaseLinks
An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
☆37Updated 2 years ago
Alternatives and similar repositories for OrchestratingSingleCellAnalysis-release
Users that are interested in OrchestratingSingleCellAnalysis-release are comparing it to the libraries listed below
Sorting:
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 5 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆66Updated 3 weeks ago
- A General Framework for Consensus Partitioning☆63Updated 7 months ago
- Functional enrichment analysis of high-throughput omics data☆20Updated 8 months ago
- Toolkit for Single-Cell Velocity☆59Updated 2 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Bioconductor package for management of multi-assay data☆72Updated 3 weeks ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- Clone of the Bioconductor repository for the basilisk package.☆28Updated 2 weeks ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆22Updated 2 months ago
- R package for benchmarking single cell analysis methods☆32Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Visualise correlation results and test significancies of these☆23Updated 5 years ago
- MSigDB gene sets for multiple organisms in a tidy data format☆82Updated last month
- Explore design matrices interactively with R/Shiny☆37Updated 5 months ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆31Updated 3 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- Toolbox with R scripts☆38Updated 6 years ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated 2 months ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Content for the OSCA Book.☆66Updated 2 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆106Updated 2 years ago
- DESeq2 or edgeR☆22Updated 8 years ago
- ☆16Updated last year
- DEP package☆28Updated 2 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- ☆27Updated 4 years ago