Alternatives and similar repositories for OrchestratingSingleCellAnalysis-release

Users that are interested in OrchestratingSingleCellAnalysis-release are comparing it to the libraries listed below

• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆47Updated 3 months ago
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆65Updated 11 months ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆69Updated last month
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆24Updated 5 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆61Updated last year
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆74Updated last month
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last month
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆59Updated 6 months ago
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆24Updated 6 months ago
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆29Updated 2 months ago
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated 2 months ago
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆38Updated 6 years ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆47Updated 2 years ago
• waldronlab / enrichOmics
  Functional enrichment analysis of high-throughput omics data
  ☆20Updated last year
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆84Updated 5 months ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆66Updated 4 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆31Updated 4 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated last year
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆33Updated 4 months ago
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆38Updated 2 months ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆107Updated 2 years ago
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 7 years ago
• mikelove / deseq2_or_edger
  DESeq2 or edgeR
  ☆22Updated 9 years ago
• shazanfar / DCARS
  Differential Correlation across Ranked Samples
  ☆12Updated 2 years ago
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆79Updated last year
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆38Updated this week
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 5 years ago