Alternatives and similar repositories for OrchestratingSingleCellAnalysis-release

Users that are interested in OrchestratingSingleCellAnalysis-release are comparing it to the libraries listed below

• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆23Updated 5 years ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last week
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated 2 weeks ago
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆37Updated last month
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆58Updated 6 months ago
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆46Updated last month
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆37Updated 5 years ago
• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆45Updated 6 months ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆56Updated 5 months ago
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 6 years ago
• carpentries-incubator / bioc-rnaseq
  Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
  ☆22Updated last week
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆61Updated 4 months ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆63Updated 4 months ago
• markrobinsonuzh / cytofWorkflow
  ☆16Updated last year
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆45Updated 2 years ago
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆24Updated 5 years ago
• hansenlab / minfi
  Devel repository for minfi
  ☆61Updated last year
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆31Updated last year
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆20Updated last year
• Shians / Glimma
  Glimma R package
  ☆50Updated 9 months ago
• stemangiola / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated 5 months ago
• waldronlab / enrichOmics
  Functional enrichment analysis of high-throughput omics data
  ☆20Updated 5 months ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆56Updated 8 months ago
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆31Updated 4 months ago
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆32Updated 10 months ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• mikelove / deseq2_or_edger
  DESeq2 or edgeR
  ☆22Updated 8 years ago