An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
☆37Mar 15, 2023Updated 2 years ago
Alternatives and similar repositories for OrchestratingSingleCellAnalysis-release
Users that are interested in OrchestratingSingleCellAnalysis-release are comparing it to the libraries listed below
Sorting:
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 8 years ago
- Take command of your set enrichment analyses.☆23Updated this week
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Mar 15, 2023Updated 2 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆48Sep 18, 2025Updated 5 months ago
- ☆56Dec 13, 2020Updated 5 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Mar 10, 2022Updated 3 years ago
- ☆12Jul 13, 2018Updated 7 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Aug 26, 2020Updated 5 years ago
- Automate package and project setup for Bioconductor packages☆54Mar 21, 2025Updated 11 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Feb 15, 2021Updated 5 years ago
- The blog of tidyomics☆14Jul 12, 2025Updated 7 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Mar 15, 2023Updated 2 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Jun 4, 2019Updated 6 years ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆26Mar 15, 2023Updated 2 years ago
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- Nascent Transcription Processing Pipeline☆22Nov 20, 2025Updated 3 months ago
- See: https://www.iscb.org/ismb2018/3511#am1☆18Sep 10, 2018Updated 7 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Aug 1, 2023Updated 2 years ago
- Clone of the Bioconductor repository for the batchelor package.☆18Mar 13, 2025Updated 11 months ago
- An R package to plot interactive three-way differential expression analysis☆38Jan 14, 2026Updated last month
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- Foundation of vector-like and list-like containers in Bioconductor☆17Oct 30, 2025Updated 3 months ago
- ☆64Mar 18, 2025Updated 11 months ago
- Analysis code and results for dreamlet☆11Jul 18, 2025Updated 7 months ago
- R package for analysis of single-cell data using graphs☆10Jun 8, 2023Updated 2 years ago
- Toolkit for Single-Cell Velocity☆59Jul 8, 2025Updated 7 months ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Apr 26, 2024Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 3 months ago
- DESeq2 or edgeR☆22Sep 28, 2016Updated 9 years ago
- Foundation of integer range manipulation in Bioconductor☆23Oct 30, 2025Updated 3 months ago
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Sep 16, 2019Updated 6 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆167Oct 2, 2025Updated 4 months ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago