neuhausi / single-cell-viewerLinks
R package to visualize scRNA sequencing data.
☆20Updated 4 years ago
Alternatives and similar repositories for single-cell-viewer
Users that are interested in single-cell-viewer are comparing it to the libraries listed below
Sorting:
- scDataviz: single cell dataviz and downstream analyses☆66Updated 4 years ago
- Toolbox with R scripts☆38Updated 7 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Updated 3 years ago
- ☆56Updated 5 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- R package containing the Cerebro application.☆40Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Updated 2 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 7 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 3 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆42Updated 8 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆46Updated 3 years ago
- Identify and correct invalid gene symbols☆62Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Clone of the Bioconductor repository for the batchelor package.☆18Updated 11 months ago
- Normalize CITEseq Data☆67Updated 3 months ago
- scRNA-seq cell type identification☆44Updated 6 years ago
- An r package that works as a wrapper to homologene☆49Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- R/Bioconductor package for working with 10x scATACseq data☆41Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆58Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 5 years ago
- ☆41Updated 7 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Toolkit for Single-Cell Velocity☆59Updated 7 months ago
- ☆43Updated 5 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- An R Package for Geneset Enrichment Workflows☆79Updated 2 months ago
- ☆38Updated 9 years ago