neuhausi / single-cell-viewerLinks
R package to visualize scRNA sequencing data.
☆20Updated 3 years ago
Alternatives and similar repositories for single-cell-viewer
Users that are interested in single-cell-viewer are comparing it to the libraries listed below
Sorting:
- ☆55Updated 4 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Toolbox with R scripts☆38Updated 7 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- scDataviz: single cell dataviz and downstream analyses☆64Updated 4 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆42Updated 8 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- Normalize CITEseq Data☆66Updated 3 weeks ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆14Updated 2 years ago
- Identify and correct invalid gene symbols☆60Updated last year
- R package containing the Cerebro application.☆40Updated 4 years ago
- An r package that works as a wrapper to homologene☆47Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 7 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 4 months ago
- An R-based interface for loom files☆67Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆41Updated 7 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago