neuhausi / single-cell-viewerLinks
R package to visualize scRNA sequencing data.
☆20Updated 3 years ago
Alternatives and similar repositories for single-cell-viewer
Users that are interested in single-cell-viewer are comparing it to the libraries listed below
Sorting:
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- Identify and correct invalid gene symbols☆60Updated last year
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Clone of the Bioconductor repository for the batchelor package.☆18Updated 9 months ago
- Toolbox with R scripts☆38Updated 7 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- ☆55Updated 5 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 7 years ago
- scDataviz: single cell dataviz and downstream analyses☆65Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- GLASS consortium☆14Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆44Updated 3 years ago
- ☆43Updated 4 years ago
- R package containing the Cerebro application.☆40Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- An r package that works as a wrapper to homologene☆47Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Normalize CITEseq Data☆66Updated last month
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Updated 5 months ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆43Updated 8 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Clone identification from single-cell data☆61Updated 3 years ago