neuhausi / single-cell-viewerLinks
R package to visualize scRNA sequencing data.
☆20Updated 3 years ago
Alternatives and similar repositories for single-cell-viewer
Users that are interested in single-cell-viewer are comparing it to the libraries listed below
Sorting:
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- R package containing the Cerebro application.☆40Updated 3 years ago
- ☆55Updated 4 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- Toolkit for Single-Cell Velocity☆58Updated last month
- Toolbox with R scripts☆38Updated 6 years ago
- Identify and correct invalid gene symbols☆59Updated 9 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Normalize CITEseq Data☆66Updated 4 months ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- An r package that works as a wrapper to homologene☆46Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆60Updated last week
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- Clone of the Bioconductor repository for the batchelor package.☆17Updated 5 months ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago