Alternatives and similar repositories for bigSCale2

Users that are interested in bigSCale2 are comparing it to the libraries listed below

• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 4 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆97Updated 4 years ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆124Updated 5 months ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆55Updated 4 years ago
• cellgeni / batchbench
  ☆47Updated 3 years ago
• MarioniLab / DropletUtils
  Clone of the Bioconductor repository for the DropletUtils package.
  ☆61Updated 2 weeks ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆78Updated 3 months ago
• GIS-SP-Group / RCA
  R package for robust clustering of single cell RNA sequencing data
  ☆40Updated 2 years ago
• MarioniLab / MNN2017
  Code for the MNN manuscript figures
  ☆50Updated 6 years ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆69Updated 5 years ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆75Updated 2 years ago
• rpolicastro / scProportionTest
  ☆71Updated 2 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 5 months ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆77Updated 6 months ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆82Updated 4 months ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆97Updated 2 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 8 months ago
• cssmillie / ulcerative_colitis
  ☆63Updated 5 years ago
• rcannood / SCORPIUS
  Linear trajectory inference for single-cell RNA-seq
  ☆61Updated last year
• caleblareau / BuenColors
  R package of colors for the Buenrostro Lab
  ☆84Updated last year
• kharchenkolab / dropEst
  Pipeline for initial analysis of droplet-based single-cell RNA-seq data
  ☆92Updated 3 years ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆43Updated last year
• ggjlab / scMCA
  Mouse cell atlas
  ☆61Updated 5 years ago
• sansomlab / tenx
  Pipelines for the analysis of 10x single-cell RNA-sequencing data
  ☆58Updated 2 years ago
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆52Updated 4 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• cole-trapnell-lab / cicero-release
  ☆59Updated last year
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 5 years ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago