iaconogi / bigSCale2Links
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
☆108Updated 2 years ago
Alternatives and similar repositories for bigSCale2
Users that are interested in bigSCale2 are comparing it to the libraries listed below
Sorting:
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆81Updated last month
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated 2 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Updated 9 months ago
- ☆46Updated 3 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆64Updated 5 months ago
- R package of colors for the Buenrostro Lab☆86Updated last year
- ☆56Updated 5 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆80Updated 9 years ago
- chromatin Variability Across Regions (of the genome!)☆185Updated last year
- Single Cell Cluster Evaluation☆99Updated 4 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- Normalize CITEseq Data☆67Updated 3 months ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆45Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- ☆75Updated 2 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Updated 3 months ago
- ☆64Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- Genetic multiplexing of barcoded single cell RNA-seq☆132Updated last year
- Tools for single-cell data processing☆132Updated last year
- Code for the MNN manuscript figures☆49Updated 7 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆81Updated 7 months ago
- Mouse cell atlas☆61Updated 5 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago