iaconogi / bigSCale2Links
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
☆107Updated 2 years ago
Alternatives and similar repositories for bigSCale2
Users that are interested in bigSCale2 are comparing it to the libraries listed below
Sorting:
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- ☆46Updated 3 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 8 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated 9 months ago
- ☆55Updated 5 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆79Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 3 months ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆127Updated last month
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- chromatin Variability Across Regions (of the genome!)☆183Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆80Updated 6 months ago
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆99Updated 4 years ago
- ☆73Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- Normalize CITEseq Data☆66Updated last month
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 2 weeks ago
- An R interface to enrichR☆93Updated 10 months ago
- R package of colors for the Buenrostro Lab☆86Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Genetic multiplexing of barcoded single cell RNA-seq☆131Updated last year
- ☆63Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- ☆44Updated 3 weeks ago