iaconogi / bigSCale2Links
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
☆107Updated 2 years ago
Alternatives and similar repositories for bigSCale2
Users that are interested in bigSCale2 are comparing it to the libraries listed below
Sorting:
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated last month
- An R toolkit for estimation of cell composition from bulk expression data☆79Updated 4 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 6 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- ☆47Updated 3 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆76Updated 2 years ago
- Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRN…☆123Updated last year
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- ☆55Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 7 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- ☆73Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Mouse cell atlas☆61Updated 5 years ago
- Normalize CITEseq Data☆66Updated 6 months ago
- An R interface to enrichR☆93Updated 8 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- ☆63Updated 5 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 4 years ago
- ☆58Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 10 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated this week
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆80Updated 8 years ago