ocbe-uio / DIscBIO
A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
☆12Updated last year
Related projects ⓘ
Alternatives and complementary repositories for DIscBIO
- Gene-level general linear mixed model☆18Updated 2 months ago
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆17Updated 4 years ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 3 years ago
- Core utilities for single-cell RNA-seq☆12Updated 8 months ago
- ☆23Updated last year
- R/Shiny package for network-integrated pathway enrichment analysis☆14Updated 3 years ago
- Toolbox package for organizing and working with TCGA data☆23Updated 3 weeks ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆9Updated 3 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 3 weeks ago
- R interface to megadepth: BigWig and BAM related utilities☆11Updated 6 months ago
- ☆17Updated 6 months ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆19Updated this week
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆13Updated 2 years ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 3 years ago
- Hierarchical Random Forest for Information Transfer☆12Updated 3 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated 3 weeks ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 5 months ago
- R package for Flexible dot plots☆26Updated 2 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆13Updated last year
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆12Updated last year
- Tools for assessing clustering robustness☆22Updated last week
- Collection of scripts for pre- and postprocessing neoantigen discovery calls.☆9Updated 4 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Updated 4 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago