Alternatives and similar repositories for DIscBIO

Users that are interested in DIscBIO are comparing it to the libraries listed below

• ELELAB / CAncer-bioMarker-Prediction-Pipeline-CAMPP
  The Cancer bioMarker Prediction Pipeline (CAMPP)
  ☆19Updated 5 years ago
• liuhong-jia / scAnno
  ☆27Updated 8 months ago
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated 9 months ago
• unistbig / netGO
  R/Shiny package for network-integrated pathway enrichment analysis
  ☆14Updated 5 years ago
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆14Updated 4 years ago
• diegommcc / digitalDLSorteR
  digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data
  ☆15Updated last year
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆28Updated 2 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆24Updated 4 months ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 4 years ago
• datarail / gr_metrics
  ☆16Updated 2 years ago
• AstraZeneca / Omicsfold
  Multi-omics data normalisation, model fitting and visualisation.
  ☆27Updated 2 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated last month
• igordot / babelgene
  Gene orthologs for model organisms in a tidy data format
  ☆14Updated 3 years ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated 2 months ago
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆17Updated 10 months ago
• ding-lab / VirusScan
  VirusScan Pipeline
  ☆12Updated this week
• danro9685 / SparseSignatures
  Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…
  ☆11Updated 3 months ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆18Updated 2 months ago
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆22Updated 6 years ago
• tgirke / longevityTools
  Analysis tools for longevity research
  ☆21Updated 8 years ago
• karissawhiting / cbioportalR
  R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
  ☆23Updated last week
• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆14Updated 9 months ago
• kstawiski / OmicSelector
  OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …
  ☆35Updated 3 weeks ago
• waldronlab / PublicDataResources
  Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…
  ☆15Updated 9 months ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• kmezhoud / bioCancer
  A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis
  ☆21Updated last year
• stephenturner / msigdf
  Molecular Signatures Database (MSigDB) in a data frame
  ☆16Updated 7 years ago
• HenrikBengtsson / aroma.affymetrix
  🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
  ☆12Updated last month
• ELELAB / MoonlightR
  ☆17Updated last year
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆18Updated 2 months ago