Alternatives and similar repositories for DIscBIO

Users that are interested in DIscBIO are comparing it to the libraries listed below

• ELELAB / CAncer-bioMarker-Prediction-Pipeline-CAMPP
  The Cancer bioMarker Prediction Pipeline (CAMPP)
  ☆17Updated 5 years ago
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated 7 months ago
• unistbig / netGO
  R/Shiny package for network-integrated pathway enrichment analysis
  ☆13Updated 4 years ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆28Updated 2 years ago
• liuhong-jia / scAnno
  ☆25Updated 5 months ago
• igordot / babelgene
  Gene orthologs for model organisms in a tidy data format
  ☆14Updated 3 years ago
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆14Updated 3 years ago
• Terkild / CITE-seq_optimization
  Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
  ☆10Updated 4 years ago
• waldronlab / PublicDataResources
  Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…
  ☆15Updated 6 months ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆23Updated last month
• AstraZeneca / Omicsfold
  Multi-omics data normalisation, model fitting and visualisation.
  ☆28Updated 2 years ago
• ELELAB / MoonlightR
  ☆17Updated last year
• diegommcc / digitalDLSorteR
  digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data
  ☆14Updated last year
• danro9685 / SparseSignatures
  Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…
  ☆11Updated last month
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 6 years ago
• yasinkaymaz / HieRFIT
  Hierarchical Random Forest for Information Transfer
  ☆13Updated 4 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆18Updated 3 years ago
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆17Updated 7 months ago
• JamesJoly / DGSEA
  An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…
  ☆14Updated 2 years ago
• broadinstitute / dropviz
  Shiny app for visualization, exploration of mouse brain single cell gene expression
  ☆11Updated 7 years ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 4 years ago
• karissawhiting / cbioportalR
  R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
  ☆23Updated 11 months ago
• ncborcherding / TRGAted
  Survival Analysis for Protein-Level TCGA Analysis
  ☆11Updated 6 years ago
• AlexsLemonade / scpca-nf
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆13Updated this week
• benoukraflab / TFregulomeR-old
  TFregulomeR reveals transcription factors’ context-specific features and functions
  ☆15Updated 3 years ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated 3 weeks ago
• kmezhoud / bioCancer
  A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis
  ☆21Updated last year
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆20Updated 3 weeks ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated this week
• HenrikBengtsson / aroma.affymetrix
  🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
  ☆12Updated 3 months ago