annalam / cfdna-wgs-manuscript-codeLinks
Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"
☆14Updated last year
Alternatives and similar repositories for cfdna-wgs-manuscript-code
Users that are interested in cfdna-wgs-manuscript-code are comparing it to the libraries listed below
Sorting:
- Scripts used for the ACT paper☆12Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated last month
- ☆15Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14Updated 6 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Updated 4 years ago
- ☆11Updated 2 years ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆14Updated last month
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Updated 5 years ago
- ☆18Updated 4 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated 2 years ago
- ☆10Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆14Updated 3 years ago
- ☆25Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Updated 4 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 5 years ago
- ☆11Updated 7 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- ☆12Updated 2 years ago
- ☆19Updated last year
- Paired-seq☆14Updated last year
- Suite of analysis tools for spatial total RNA-sequencing☆12Updated 2 years ago
- Micro DNA identification☆24Updated 4 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆24Updated 3 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 5 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆17Updated last year
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Updated 3 weeks ago