annalam / cfdna-wgs-manuscript-code
Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"
☆11Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for cfdna-wgs-manuscript-code
- Scripts used for the ACT paper☆12Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated last month
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆13Updated 5 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆14Updated 4 years ago
- ☆19Updated 5 months ago
- ☆15Updated 3 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆18Updated 2 years ago
- ☆11Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- ☆40Updated 3 months ago
- ☆14Updated last year
- ☆23Updated last year
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- ☆15Updated last month
- ☆20Updated last year
- ☆15Updated 4 years ago
- Micro DNA identification☆22Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆14Updated last year
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆15Updated 6 months ago
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- Toolkit for single-cell copy number analysis☆18Updated last month
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated last year
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 6 months ago
- ☆30Updated 7 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated last year
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 3 years ago