annalam / cfdna-wgs-manuscript-codeLinks
Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"
☆16Updated last year
Alternatives and similar repositories for cfdna-wgs-manuscript-code
Users that are interested in cfdna-wgs-manuscript-code are comparing it to the libraries listed below
Sorting:
- Scripts used for the ACT paper☆12Updated 4 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆23Updated last month
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14Updated 6 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- ☆11Updated 2 years ago
- ☆16Updated 4 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 6 months ago
- Detecting cancer subtypes with machine learning.☆10Updated 6 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Updated last year
- SCCNV: a software tool for identifying copy number variation from single-cell whole-genome sequencing☆13Updated 5 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- ☆20Updated 5 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Updated 5 years ago
- A pipeline for Smooth-seq data analysis.☆10Updated 4 years ago
- ☆18Updated 2 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Updated 6 years ago
- ☆28Updated 2 years ago
- ☆19Updated 2 years ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 3 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 6 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- TRUST4 manuscript evaluation☆16Updated 3 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Updated 6 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Updated 2 years ago
- ☆14Updated 2 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Updated 3 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 3 months ago
- An R package to plot maps of clone distributions in somatic evolution☆19Updated 2 years ago