wulabupenn / scNT-seqLinks
Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)
☆16Updated last year
Alternatives and similar repositories for scNT-seq
Users that are interested in scNT-seq are comparing it to the libraries listed below
Sorting:
- ☆17Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- A pipeline for scRNA-seq data analysis☆14Updated 2 months ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆22Updated 2 years ago
- R package of CSOmap(developing☆14Updated 3 years ago
- ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineageCode and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆9Updated 5 years ago
- ☆17Updated 2 years ago
- ☆49Updated 10 months ago
- ☆20Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 4 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- ☆31Updated 4 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Updated 5 years ago
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15Updated 3 years ago
- ☆20Updated last year
- ☆34Updated last year
- ☆17Updated 2 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 5 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- ☆27Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆11Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago