Alternatives and similar repositories for scNT-seq:

Users that are interested in scNT-seq are comparing it to the libraries listed below

• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆23Updated 2 years ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆17Updated 4 years ago
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 2 years ago
• saezlab / footprints
  Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"
  ☆20Updated 6 years ago
• wenweixiong / MARVEL
  ☆45Updated 6 months ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆12Updated 2 years ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• quadbio / RNAseq_tutorial
  ☆22Updated 4 months ago
• WRui / Post_Implantation
  ☆27Updated 3 years ago
• ChengLiLab / SCALE
  A tissue-specific single-cell biological age model
  ☆10Updated last year
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆28Updated 2 years ago
• UPSUTER / GEMLI
  ☆29Updated 3 weeks ago
• Castelo-Branco-lab / scCut-Tag_2020
  Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)
  ☆11Updated 3 years ago
• molgenis / scRNA-seq
  ☆18Updated 11 months ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 2 years ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 4 years ago
• dbrg77 / ISSAAC-seq
  ☆16Updated last year
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆32Updated 3 years ago
• Henikoff / scCUT-Tag
  ☆15Updated last year
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆12Updated last year
• gxiaolab / scAllele
  ☆31Updated 9 months ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆16Updated last year
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆15Updated last year
• vincenthahaut / FLASH-Seq
  ☆10Updated 2 years ago
• cole-trapnell-lab / monocle2-rge-paper
  Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)
  ☆28Updated 4 years ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆18Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 3 months ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆23Updated 7 months ago