joed3 / GTExV6PRareVariationLinks
Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript
☆17Updated 8 years ago
Alternatives and similar repositories for GTExV6PRareVariation
Users that are interested in GTExV6PRareVariation are comparing it to the libraries listed below
Sorting:
- Readme☆10Updated 5 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆16Updated 4 years ago
- General Use Scripts and Helper functions☆16Updated 7 years ago
- bioinformatics R test code☆14Updated last week
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- ☆23Updated 6 months ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago
- ☆13Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- R package to detect splicing QTLs (sQTLs)☆15Updated 4 years ago
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆19Updated last month
- a set of NGS pipelines☆24Updated last month
- software package for integrative genetic association analysis☆35Updated 2 years ago
- ☆16Updated 8 years ago
- ☆39Updated 7 months ago
- ☆12Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 8 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Updated 3 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆46Updated last year
- GWAS genetics Fine-mapping method☆26Updated last year
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago
- simplified cellranger for long-read data☆19Updated 5 months ago
- ☆24Updated 4 years ago