qqwang-berkeley / JUM
A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
☆28Updated 2 years ago
Alternatives and similar repositories for JUM
Users that are interested in JUM are comparing it to the libraries listed below
Sorting:
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- simplified cellranger for long-read data☆19Updated 3 weeks ago
- RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to iden…☆9Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- ☆17Updated 11 months ago
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- ☆23Updated 3 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated last month
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- ☆15Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- ☆21Updated 2 months ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 3 months ago
- Comprehensive Human Expressed SequenceS☆16Updated 9 months ago