qqwang-berkeley / JUM
A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
☆28Updated 2 years ago
Alternatives and similar repositories for JUM:
Users that are interested in JUM are comparing it to the libraries listed below
- Differential ATAC-seq toolkit☆27Updated last year
- ☆17Updated 10 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- simplified cellranger for long-read data☆18Updated this week
- ☆23Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- ☆21Updated last month
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Snakemake pipeline for running MAJIQ☆22Updated last year
- RAGE-seq scripts☆18Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆17Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- scover☆23Updated last year
- Scripts to install as a Bioconda package for making workflows☆18Updated 7 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month