A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
☆30Apr 10, 2023Updated 2 years ago
Alternatives and similar repositories for JUM
Users that are interested in JUM are comparing it to the libraries listed below
Sorting:
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- iCount, protein-RNA interaction analytics☆23Dec 14, 2021Updated 4 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Apr 30, 2021Updated 4 years ago
- Paired-seq☆15Jul 17, 2024Updated last year
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- TRUST4 manuscript evaluation☆16Jul 8, 2022Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Jan 18, 2021Updated 5 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆29May 19, 2017Updated 8 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆88Jan 24, 2025Updated last year
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆111Jul 23, 2025Updated 7 months ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 7 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 5 years ago
- ☆10May 31, 2022Updated 3 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆293Nov 6, 2025Updated 3 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 5 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Jun 14, 2020Updated 5 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Aug 18, 2018Updated 7 years ago
- BLAST-Like Alignment Tool☆22Jan 11, 2019Updated 7 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆136Aug 21, 2024Updated last year
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 5 years ago
- ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142☆11Sep 6, 2022Updated 3 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- ☆11Aug 3, 2018Updated 7 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Estimate PTM hotspots in protein sequence alignments☆14Feb 6, 2019Updated 7 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 4 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- splicing and feature maps for RBPs☆25Apr 19, 2022Updated 3 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 8 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago