A Bioconductor package to retrieve and analyze data from the Human Protein Atlas
☆39Dec 7, 2025Updated 3 months ago
Alternatives and similar repositories for HPAanalyze
Users that are interested in HPAanalyze are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.☆26Nov 18, 2023Updated 2 years ago
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- Get SNP proxies from the 1000 Genomes Project.☆31Oct 4, 2018Updated 7 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆56Jun 29, 2023Updated 2 years ago
- cEll tyPe enrIChment☆16Dec 11, 2022Updated 3 years ago
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆19May 20, 2024Updated last year
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆27Nov 2, 2021Updated 4 years ago
- Explore the cancer relevance of your gene list☆53Dec 17, 2025Updated 3 months ago
- CI for R at Travis, GitHub Actions, Azure Pipelines, ...☆30Updated this week
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- 🌓 Allele specific analyses across cell states and conditions☆10Nov 28, 2022Updated 3 years ago
- R package to do the Ligand Receptor Analysis Visualization☆49Feb 13, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆14May 1, 2023Updated 2 years ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Apr 7, 2024Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- ☆19Jul 8, 2021Updated 4 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- ☆10Dec 15, 2024Updated last year
- ☆12Sep 2, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆16Apr 18, 2025Updated 11 months ago
- Fast API server for calculating linkage disequilibrium☆20Apr 24, 2025Updated 11 months ago
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated 10 months ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆32Mar 19, 2026Updated last week
- Code related to scRNA analysis using the scAmpi workflow☆27Jan 21, 2026Updated 2 months ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated 3 months ago
- ☆13Nov 21, 2019Updated 6 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆35Mar 17, 2026Updated last week
- ☆11Mar 16, 2022Updated 4 years ago
- collections of tools for cytometry data analysis☆14Jul 9, 2020Updated 5 years ago
- Code to reproduce TNBC analysis and figures☆24Jun 13, 2022Updated 3 years ago
- PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways☆63Mar 18, 2024Updated 2 years ago
- ☆10May 22, 2019Updated 6 years ago
- ☆17Jan 9, 2023Updated 3 years ago