anhtr / HPAanalyzeView external linksLinks
A Bioconductor package to retrieve and analyze data from the Human Protein Atlas
☆39Dec 7, 2025Updated 2 months ago
Alternatives and similar repositories for HPAanalyze
Users that are interested in HPAanalyze are comparing it to the libraries listed below
Sorting:
- R package for tissue-specific gene enrichment☆15Mar 10, 2022Updated 3 years ago
- cEll tyPe enrIChment☆16Dec 11, 2022Updated 3 years ago
- Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.☆26Nov 18, 2023Updated 2 years ago
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆14May 1, 2023Updated 2 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- a protein descriptor for site prediction☆16Aug 9, 2019Updated 6 years ago
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 4 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Apr 7, 2024Updated last year
- Get SNP proxies from the 1000 Genomes Project.☆31Oct 4, 2018Updated 7 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- ☆17Jan 9, 2023Updated 3 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆54Jun 29, 2023Updated 2 years ago
- Fast API server for calculating linkage disequilibrium☆20Apr 24, 2025Updated 9 months ago
- ☆19Jul 8, 2021Updated 4 years ago
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆18May 20, 2024Updated last year
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Apr 25, 2023Updated 2 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- 🌓 Allele specific analyses across cell states and conditions☆10Nov 28, 2022Updated 3 years ago
- Calculating paramagnetic NMR effects in proteins☆10May 20, 2022Updated 3 years ago
- R as a backend for web apps.☆10Mar 7, 2018Updated 7 years ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆12Dec 12, 2022Updated 3 years ago
- PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways☆63Mar 18, 2024Updated last year
- Code to reproduce TNBC analysis and figures☆24Jun 13, 2022Updated 3 years ago
- a toolbox for the manipulation, modelling and analysis of molecular structures☆27Nov 27, 2025Updated 2 months ago
- Code related to scRNA analysis using the scAmpi workflow☆27Jan 21, 2026Updated 3 weeks ago
- ☆11Mar 16, 2022Updated 3 years ago
- Estimate PTM hotspots in protein sequence alignments☆14Feb 6, 2019Updated 7 years ago
- EXpression PREdiction with Summary Statistics Only☆13Dec 10, 2025Updated 2 months ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 3 years ago
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- renders a KEGGML file and displays a KEGG pathway☆10Jul 14, 2016Updated 9 years ago
- Home for the 2020 Chicago R Collab event☆10Feb 19, 2020Updated 5 years ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- R package to do the Ligand Receptor Analysis Visualization☆49Nov 27, 2025Updated 2 months ago
- Reads data files acquired by MALDI-TOF MS on Bruker Daltonics machines of the *flex series☆14Oct 17, 2025Updated 3 months ago
- R for Mass Spectrometry documentation☆14Nov 19, 2025Updated 2 months ago