pablo-gar / somatic_mutations_GTExLinks
Methods and analysis for Garcia-Nieto, et al. Somatic mutations
☆15Updated 5 years ago
Alternatives and similar repositories for somatic_mutations_GTEx
Users that are interested in somatic_mutations_GTEx are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆22Updated 3 years ago
- ☆25Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆18Updated 4 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 3 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- ☆14Updated 3 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 5 years ago
- ☆49Updated 11 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- ☆17Updated 2 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- ☆44Updated 6 years ago
- ☆23Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆20Updated last year
- Scripts used for the ACT paper☆12Updated 4 years ago
- ☆47Updated 6 months ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆12Updated 4 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago