franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial cell states"
☆21Updated 2 years ago
Alternatives and similar repositories for scRNA-seq-Analysis-of-Prostate-Cancer-Samples:
Users that are interested in scRNA-seq-Analysis-of-Prostate-Cancer-Samples are comparing it to the libraries listed below
- ☆16Updated 4 years ago
- ☆16Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- ☆37Updated 2 years ago
- ☆17Updated last year
- Lung cancer 10X analysis☆11Updated 4 years ago
- analysis script for GBM single cell RNA seq data☆18Updated 3 years ago
- ☆32Updated 3 years ago
- ☆22Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆13Updated 5 months ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆27Updated 2 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Updated 2 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- ☆13Updated 7 years ago
- Code used to process the data of the HBCA project☆27Updated last year
- Spatial transcriptomics of heart tissue☆21Updated 2 years ago
- A pipeline for scRNA-seq data analysis☆13Updated last month
- ☆18Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- ☆9Updated 9 months ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 2 months ago
- The codes and files for the study of subsolid nodules (SSN).☆14Updated 4 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 3 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆11Updated last year
- ☆18Updated 2 years ago