repository containing analysis scripts and auxiliary files
☆38Apr 9, 2020Updated 6 years ago
Alternatives and similar repositories for sci-plex
Users that are interested in sci-plex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Apr 14, 2021Updated 5 years ago
- Code and example of the D-SPIN framework☆31May 12, 2026Updated last week
- [DEPRECATED] An R package for Google Genomics API queries.☆45Mar 15, 2023Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆19Jul 28, 2025Updated 9 months ago
- Drug Response Prediction and Biomarker Discovery Using Multi-Modal Deep Learning☆14Apr 24, 2024Updated 2 years ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated last month
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 4 years ago
- Python Client Library for the G2P Portal API☆15Aug 14, 2025Updated 9 months ago
- Supervised Training of Conditional Monge Maps☆19Oct 30, 2023Updated 2 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆174Feb 25, 2025Updated last year
- Code repository for the snRNA-seq cross-tissue atlas project☆21Feb 22, 2022Updated 4 years ago
- An IPython/Jupyter widget for interactive molecular visualization, based on Molstar. This is the Jupyter widget version of nano-protein-…☆47Nov 4, 2025Updated 6 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- analysis pipeline for CODEC data☆13Apr 22, 2026Updated last month
- PTa Analysis TOolkit☆16May 12, 2026Updated last week
- 该存储库,主要存放根据自己所掌握的NGS差异表达分析技术方法为主,具体的实验以及方案设计等将不会存放在此存储库。☆15May 19, 2020Updated 6 years ago
- ☆21Dec 22, 2024Updated last year
- Template repository for creating novel models with scvi-tools☆20Jan 18, 2023Updated 3 years ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆171Oct 31, 2024Updated last year
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆16May 4, 2021Updated 5 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- ☆15Jun 3, 2019Updated 6 years ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆62Jul 22, 2024Updated last year
- ATACseqQC tutorials for BioC 2019 workshop☆19Jul 28, 2020Updated 5 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- Store collections of experimental data based on TileDB☆11Updated this week
- Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2☆17Apr 21, 2023Updated 3 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆23Apr 10, 2025Updated last year
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆30Oct 3, 2017Updated 8 years ago
- [NBME] Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning☆24Sep 2, 2025Updated 8 months ago
- Latex templates for submitting the NIH F31 grant☆16Sep 18, 2019Updated 6 years ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆141Jul 19, 2022Updated 3 years ago
- ☆19Sep 18, 2019Updated 6 years ago
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated 2 months ago