What you need to process the Quarterly DepMap-Omics releases from Terra
☆126Jul 17, 2026Updated last month
Alternatives and similar repositories for depmap_omics
Users that are interested in depmap_omics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 6 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆25Feb 13, 2021Updated 5 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 4 years ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Apr 7, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆29Jul 10, 2023Updated 3 years ago
- Explore the cancer relevance of your gene list☆56Aug 11, 2026Updated 3 weeks ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 5 years ago
- Cancer Dependency Map package☆33Aug 16, 2024Updated 2 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 6 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Mar 29, 2019Updated 7 years ago
- Taiga for Dataset management☆12May 5, 2026Updated 4 months ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Published methods☆15Oct 19, 2016Updated 9 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Aug 14, 2026Updated 3 weeks ago
- Easy batch submission of adhoc jobs onto GCP☆13Updated this week
- ☆10Oct 18, 2021Updated 4 years ago
- Modeling of time series data for CRISPR KO experiments☆41Updated this week
- Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.☆84Jul 23, 2026Updated last month
- R package containing useful functions for mutational signature analysis☆88Updated this week
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Sep 3, 2021Updated 5 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆37Jan 6, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Machine Learning predictions of cancer cell sensitivity to different drugs using data from CCLE (Cancer Cell Line Encyclopedia).☆15Feb 6, 2017Updated 9 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆22Aug 18, 2020Updated 6 years ago
- R implementation of the BAGEL method to call for gene essentiality significance☆11May 1, 2018Updated 8 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆44Apr 18, 2024Updated 2 years ago
- The Supplementary data in the paper "A Survey and Systematic Assessment of Computational Methods for Drug Response Prediction"☆12Sep 27, 2019Updated 6 years ago
- dalmatian is a collection of high-level companion functions for Firecloud and FISS.☆20Aug 24, 2026Updated last week
- ☆13Sep 2, 2024Updated 2 years ago
- ☆11May 11, 2023Updated 3 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Client to access ExperimentHub resources☆11Aug 19, 2026Updated 2 weeks ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆30Feb 9, 2025Updated last year
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- This repository is comprised of notebooks, datasets, and other related materials for the Python Bootcamp☆12Feb 1, 2025Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆31Mar 21, 2019Updated 7 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆23Sep 5, 2023Updated 3 years ago