broadinstitute / depmap_omicsLinks
What you need to process the Quarterly DepMap-Omics releases from Terra
☆125Updated 4 months ago
Alternatives and similar repositories for depmap_omics
Users that are interested in depmap_omics are comparing it to the libraries listed below
Sorting:
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Updated 5 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- R package to access DoRothEA's regulons☆153Updated last year
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆235Updated last week
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆63Updated last month
- code to run sei and obtain sei and sequence class predictions☆111Updated 3 years ago
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year
- ☆68Updated 2 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- 🗂️ [vdjdb.com is up and running!] Git-based TCR database storage & management. Submissions welcome!☆149Updated 2 weeks ago
- published papers with a lot of data☆74Updated 9 months ago
- A continually expanding collection of cancer genomics notes and data☆112Updated last week
- ☆49Updated 3 years ago
- ☆40Updated 3 years ago
- Tabula Muris Senis☆107Updated 2 years ago
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 11 months ago
- Immunology-related bioinformatics data and tools☆76Updated last year
- ☆33Updated 4 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated last month
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆64Updated last month
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Updated 4 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆58Updated 8 months ago
- A docker image for single-cell analysis☆103Updated 2 months ago
- Updated implementation of the GSEA-P R application for modern R distributions☆99Updated 4 years ago
- ☆86Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated last week
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆124Updated 4 months ago
- ☆62Updated 5 years ago