PolusAI / bfioLinks
Interface to the Bioformats Java library
☆13Updated last month
Alternatives and similar repositories for bfio
Users that are interested in bfio are comparing it to the libraries listed below
Sorting:
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆57Updated this week
- native Python dataclasses for the OME data model☆65Updated 2 weeks ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Updated 2 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Updated 2 months ago
- A napari plugin for zarr backed OME-NGFF images☆42Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- Pydantic models for OME-NGFF☆24Updated 4 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 5 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆48Updated this week
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆15Updated this week
- Command-line client for Fractal☆49Updated this week
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated last week
- High quality visualization for volumetric image data☆54Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆152Updated last week
- An introduction to OME-Zarr for big bioimaging data☆24Updated last week
- GIve easy, high-level access to ome-zarr fileset☆22Updated 4 months ago
- ☆18Updated last week
- Experimental micro-service for implementing the Zarr spec over HTTP☆20Updated last week
- Reference implementation of the Graph Exchange File Format☆34Updated last week
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Updated 5 months ago
- A fully scalable robust image feature extraction library.☆28Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆37Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- Create web-based OME-Zarr galleries☆22Updated 2 months ago
- A 3D interactivity toolbox for napari☆37Updated 6 months ago
- A stable diffusion demo for napari☆11Updated 2 years ago
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Updated last month
- Python libraries for loading, running and packaging bioimage.io models☆35Updated last week
- GPU-accelerated Image Processing library for Python☆53Updated 3 weeks ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆88Updated 2 weeks ago