rendeirolab / wsidataLinks
Efficient data structures and IO for whole slide image analysis
☆17Updated 3 weeks ago
Alternatives and similar repositories for wsidata
Users that are interested in wsidata are comparing it to the libraries listed below
Sorting:
- Python API and Jupyter widget for Vitessce☆60Updated last month
- ☆30Updated last year
- Single-cell spatial proteomics analysis that makes you happy!☆48Updated last week
- Static plotting for spatialdata☆73Updated this week
- ☆19Updated 3 weeks ago
- ☆85Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆22Updated 8 months ago
- ☆40Updated last year
- Interactive visualization of spatial omics data☆73Updated last week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- Segmentation error aware clustering for multiplexed imaging☆19Updated 11 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆33Updated 5 months ago
- QuPath extension to interactively align images☆26Updated 4 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Updated 2 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Updated 4 years ago
- Automatically annotate cell types, consistently across samples.☆17Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 6 months ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Updated 2 years ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆40Updated last year
- Package for the analysis of Transcripts outside segmented cells in ST data☆23Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Updated 2 years ago
- Spatial Single-Cell Analysis Toolkit☆105Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated last month
- ☆13Updated last month
- Integrated pipeline for multiplexed image analysis☆100Updated last week
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 3 weeks ago
- ☆27Updated last year