rendeirolab / wsidataLinks
Efficient data structures and IO for whole slide image analysis
☆16Updated last week
Alternatives and similar repositories for wsidata
Users that are interested in wsidata are comparing it to the libraries listed below
Sorting:
- Single-cell spatial proteomics analysis that makes you happy!☆41Updated last week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated this week
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆21Updated 6 months ago
- Static plotting for spatialdata☆68Updated this week
- ☆29Updated last year
- Python API and Jupyter widget for Vitessce☆56Updated this week
- ☆73Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆16Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆37Updated 11 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Updated 3 weeks ago
- ☆18Updated 5 months ago
- Framework for image and flow cytometry analysis☆30Updated 2 weeks ago
- Automatically annotate cell types, consistently across samples.☆16Updated 2 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 3 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆38Updated last month
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆31Updated 3 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Updated 4 years ago
- ☆60Updated last week
- Implementation of multiplex Leiden for analysis of spatial omics data☆13Updated 2 weeks ago
- Test genes for Spatial Variation☆15Updated 10 months ago
- Identification of spatial homogeneous regions☆21Updated 2 weeks ago
- Segmentation error aware clustering for multiplexed imaging☆19Updated 9 months ago
- ☆13Updated 6 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆29Updated this week
- ☆28Updated 2 weeks ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆44Updated 3 weeks ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆11Updated 2 years ago