Alternatives and similar repositories for viral-mutation

Users that are interested in viral-mutation are comparing it to the libraries listed below

• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆177Updated last year
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆221Updated 3 years ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆271Updated 3 months ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆207Updated last year
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆252Updated 5 months ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆119Updated 4 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆101Updated 4 years ago
• microsoft / protein-sequence-models
  ☆247Updated 10 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆93Updated last year
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆142Updated last year
• google-research / proteinfer
  Deep networks for protein functional inference
  ☆174Updated 2 weeks ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆125Updated 3 years ago
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆64Updated last year
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆79Updated last year
• aqlaboratory / rgn2
  ☆106Updated last year
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆72Updated 4 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆179Updated 4 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆109Updated 3 years ago
• ntranoslab / esm-variants
  ☆74Updated last year
• frederikkemarin / BEND
  Benchmarking DNA Language Models on Biologically Meaningful Tasks
  ☆120Updated 7 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆151Updated last year
• ml4bio / e2efold
  pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"
  ☆114Updated last year
• rmrao / msa-transformer
  MSA Transformer reproduction code
  ☆83Updated 3 years ago
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆110Updated 11 months ago
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆264Updated 2 weeks ago
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆173Updated 2 months ago
• varun-shanker / structural-evolution
  ☆109Updated 11 months ago
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆270Updated 2 months ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆123Updated 7 months ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆195Updated last month