Language modeling of viral evolution
☆151Mar 24, 2023Updated 3 years ago
Alternatives and similar repositories for viral-mutation
Users that are interested in viral-mutation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"☆73Oct 11, 2023Updated 2 years ago
- Evolutionary velocity with protein language models☆98Dec 9, 2025Updated 7 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆204Mar 16, 2024Updated 2 years ago
- Pyro models of SARS-CoV-2 variants☆80Jul 26, 2024Updated 2 years ago
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆46Mar 3, 2022Updated 4 years ago
- ☆12Dec 2, 2024Updated last year
- Multi-task and masked language model-based protein sequence embedding models.☆106Jun 16, 2021Updated 5 years ago
- A generative latent variable model for biological sequence families.☆256Mar 15, 2022Updated 4 years ago
- Learning with uncertainty for biological discovery and design☆34Mar 24, 2023Updated 3 years ago
- ☆37Jan 15, 2023Updated 3 years ago
- ☆88Sep 20, 2023Updated 2 years ago
- Efficient evolution from protein language models☆226Aug 26, 2023Updated 2 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,317May 22, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Feb 14, 2023Updated 3 years ago
- ☆212Apr 21, 2025Updated last year
- MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphan…☆11Oct 16, 2022Updated 3 years ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 11 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,169Feb 7, 2024Updated 2 years ago
- Listing of papers about machine learning for proteins.☆1,712May 31, 2024Updated 2 years ago
- code repo for Set2Gaussian☆17Jun 19, 2020Updated 6 years ago
- Code for Fold2Seq paper from ICML 2021☆50May 25, 2022Updated 4 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆62Apr 8, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Neural network model for prediction of amino-acid sequence from a protein backbone structure☆25Mar 5, 2025Updated last year
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 2 years ago
- Get protein embeddings from protein sequences☆508Apr 28, 2023Updated 3 years ago
- ☆10Jun 29, 2021Updated 5 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5…☆36Mar 4, 2024Updated 2 years ago
- ☆14Jan 21, 2021Updated 5 years ago
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 3 years ago
- An R package for exploring ensembles of (generalised) linear models☆17May 20, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆739Dec 11, 2022Updated 3 years ago
- ☆110Mar 7, 2022Updated 4 years ago
- SARS-CoV-2 RBD antibody escape calculator☆13Nov 19, 2024Updated last year
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Sep 28, 2024Updated last year
- ☆10Jul 22, 2020Updated 6 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17May 26, 2025Updated last year
- Genomic language model predicts protein co-regulation and function☆91Mar 19, 2025Updated last year