brianhie / viral-mutation
Language modeling of viral evolution
☆143Updated 2 years ago
Alternatives and similar repositories for viral-mutation:
Users that are interested in viral-mutation are comparing it to the libraries listed below
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆167Updated last year
- Multi-task and masked language model-based protein sequence embedding models.☆99Updated 3 years ago
- ☆71Updated last year
- Evolutionary velocity with protein language models☆90Updated last year
- Efficient evolution from protein language models☆195Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆228Updated 2 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆72Updated 11 months ago
- ☆108Updated 3 years ago
- A generative latent variable model for biological sequence families.☆214Updated 3 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆260Updated 3 weeks ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆124Updated 3 years ago
- Deep networks for protein functional inference☆168Updated 2 weeks ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 4 years ago
- ☆104Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- Protein design and variant prediction using autoregressive generative models☆97Updated last year
- Unconstrained lattice antibody-antigen bindings generator☆107Updated 9 months ago
- Repository for mRNA Paper and CodonBERT publication.☆126Updated 9 months ago
- Compressing protein structures effectively with torsion angles☆172Updated 7 months ago
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆44Updated 3 years ago
- ☆78Updated 5 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆61Updated last year
- ☆99Updated 8 months ago
- Genomic Pre-trained Network☆255Updated this week
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆148Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆47Updated 7 months ago
- AbLang: A language model for antibodies☆137Updated last year
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆124Updated 5 months ago
- ☆93Updated 4 months ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆159Updated 2 years ago