Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"
☆73Oct 11, 2023Updated 2 years ago
Alternatives and similar repositories for EVEscape
Users that are interested in EVEscape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16May 12, 2023Updated 3 years ago
- Language modeling of viral evolution☆152Mar 24, 2023Updated 3 years ago
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Sep 18, 2025Updated 10 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆205Mar 16, 2024Updated 2 years ago
- SARS-CoV-2 RBD antibody escape calculator☆13Nov 19, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆22Aug 6, 2026Updated last week
- Pyro models of SARS-CoV-2 variants☆80Jul 26, 2024Updated 2 years ago
- Evolutionary velocity with protein language models☆98Dec 9, 2025Updated 8 months ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆38Updated this week
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 11 years ago
- machine learning guided antigenic evolution prediction☆12Jun 19, 2023Updated 3 years ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆24Mar 19, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆17Mar 26, 2024Updated 2 years ago
- ☆15Jun 26, 2018Updated 8 years ago
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated last year
- ARTIC SARS-CoV-2 workflow and reporting☆52Apr 25, 2025Updated last year
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Jun 28, 2026Updated last month
- ☆37Jan 15, 2023Updated 3 years ago
- ☆15May 29, 2024Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆81Sep 8, 2023Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆30Mar 25, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A selenium spider for GISAID☆11Apr 10, 2023Updated 3 years ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆425Jul 20, 2026Updated 3 weeks ago
- ☆92Sep 25, 2024Updated last year
- Interpretable, protein structure-based prediction of missense variant deleteriousness.☆23Aug 6, 2025Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆23Dec 9, 2023Updated 2 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆16May 15, 2025Updated last year
- ☆22Mar 5, 2025Updated last year
- Estimating time trees from very large phylogenies☆27Jul 21, 2024Updated 2 years ago
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Jul 18, 2026Updated 3 weeks ago
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆66Mar 15, 2026Updated 4 months ago
- ☆13Apr 1, 2026Updated 4 months ago
- Official repository for the ProteinGym benchmarks☆460Mar 25, 2026Updated 4 months ago
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated last year
- Official release of the ProGen models☆705Jun 2, 2026Updated 2 months ago