OATML-Markslab / EVEscapeLinks
Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"
☆61Updated last year
Alternatives and similar repositories for EVEscape
Users that are interested in EVEscape are comparing it to the libraries listed below
Sorting:
- Genomic language model predicts protein co-regulation and function☆81Updated 3 months ago
- ☆68Updated 9 months ago
- Evolutionary velocity with protein language models☆93Updated last year
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆45Updated 3 years ago
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆60Updated 4 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆87Updated 4 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆47Updated 2 months ago
- ☆49Updated 3 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆56Updated 3 months ago
- Code repository of "Deep generative design of RNA family sequences"☆35Updated 11 months ago
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆63Updated 11 months ago
- ☆107Updated last year
- A domain parser for Alphafold models☆38Updated last year
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆51Updated 2 months ago
- Transmembrane proteins predicted through Language Model embeddings☆37Updated last month
- ☆40Updated 9 months ago
- Protein language model trained on coding DNA☆47Updated 8 months ago
- ☆36Updated 5 months ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5…☆31Updated last year
- ☆74Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆101Updated 9 months ago
- Biological prediction models made simple.☆44Updated last month
- Learning the language of protein-protein interactions☆77Updated 3 weeks ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆112Updated 9 months ago
- ☆89Updated 8 months ago
- ColabFold protocol☆50Updated 8 months ago
- ProtSpace is program that helps in visualizing and investigating our protein embedding space.☆25Updated this week
- Efficient implementatin of ESM family.☆58Updated 5 months ago