Alternatives and similar repositories for EVEscape

Users that are interested in EVEscape are comparing it to the libraries listed below

• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• jbloomlab / SARS-CoV-2-RBD_DMS
  Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike
  ☆45Updated 3 years ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆81Updated 6 months ago
• tymor22 / tm-vec
  ☆69Updated last year
• TattaBio / gLM2
  ☆70Updated 11 months ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆53Updated 11 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆113Updated 5 months ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated 2 weeks ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• ntranoslab / esm-variants
  ☆78Updated 2 years ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆75Updated 6 months ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆71Updated last month
• a96123155 / UTR-LM
  ☆90Updated 11 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆94Updated 7 months ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆128Updated 10 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆119Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆69Updated 8 years ago
• Doudna-lab / GARNET_DL
  ☆36Updated 8 months ago
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆62Updated last year
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆36Updated last year
• pgmikhael / protgps
  ☆94Updated 3 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆40Updated last year
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆55Updated 9 months ago
• lyjps / Struct2GO
  Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information
  ☆27Updated last year
• maslov-group / DR-BERT
  ☆25Updated 2 years ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• JudeWells / chainsaw
  ☆43Updated last year
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year