OATML-Markslab / EVEscapeLinks
Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"
☆60Updated last year
Alternatives and similar repositories for EVEscape
Users that are interested in EVEscape are comparing it to the libraries listed below
Sorting:
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆45Updated 3 years ago
- Genomic language model predicts protein co-regulation and function☆79Updated 2 months ago
- Evolutionary velocity with protein language models☆90Updated last year
- ☆68Updated 8 months ago
- Learning the language of protein-protein interactions☆72Updated last week
- ☆74Updated last year
- ☆37Updated 4 months ago
- Code repository of "Deep generative design of RNA family sequences"☆34Updated 10 months ago
- ☆39Updated 8 months ago
- Feature map and function annotation of Proteins☆33Updated 11 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆53Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆37Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆56Updated 3 months ago
- Official release of the ProGen models☆32Updated 4 months ago
- ☆64Updated 8 months ago
- ☆85Updated 7 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆47Updated last month
- A domain parser for Alphafold models☆38Updated last year
- ☆24Updated 2 years ago
- The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"☆25Updated 5 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆36Updated 8 months ago
- Multi-label subcellular localization and sorting signal prediction based on protein foundation models☆16Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆75Updated last year
- Geometric deep learning of protein–DNA binding specificity☆73Updated 2 months ago
- Diverse Genomic Embedding Benchmark☆45Updated 2 months ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆61Updated 10 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated 5 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Biological prediction models made simple.☆43Updated last month