OATML-Markslab / EVEscapeLinks
Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"
☆63Updated last year
Alternatives and similar repositories for EVEscape
Users that are interested in EVEscape are comparing it to the libraries listed below
Sorting:
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆45Updated 3 years ago
- Evolutionary velocity with protein language models☆94Updated last year
- Genomic language model predicts protein co-regulation and function☆81Updated 5 months ago
- ☆68Updated 11 months ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 5 months ago
- Fast protein structure searching or your money back☆111Updated 4 months ago
- Neural Networks for Protein Sequence Alignment☆125Updated 9 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated 8 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- ☆92Updated 2 months ago
- ☆90Updated 10 months ago
- ☆72Updated 10 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆70Updated last week
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Mutation effects predicted from sequence co-variation☆68Updated 8 years ago
- ColabFold protocol☆53Updated 10 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Multi-class signal peptide prediction and structure decoding model.☆91Updated 6 months ago
- Multi-label subcellular localization and sorting signal prediction based on protein foundation models☆18Updated last year
- MMseqs2 app to run on your workstation or servers☆92Updated last week
- ☆77Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆119Updated last year
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆35Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆91Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆81Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆40Updated 11 months ago
- Protein language model trained on coding DNA☆49Updated 10 months ago
- Biological prediction models made simple.☆44Updated last week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆179Updated last year