Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"
☆72Oct 11, 2023Updated 2 years ago
Alternatives and similar repositories for EVEscape
Users that are interested in EVEscape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16May 12, 2023Updated 3 years ago
- Language modeling of viral evolution☆150Mar 24, 2023Updated 3 years ago
- SARS-CoV-2 RBD antibody escape calculator☆13Nov 19, 2024Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆200Mar 16, 2024Updated 2 years ago
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Sep 18, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆21Nov 8, 2024Updated last year
- Pyro models of SARS-CoV-2 variants☆78Jul 26, 2024Updated last year
- Evolutionary velocity with protein language models☆98Dec 9, 2025Updated 5 months ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 11 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37May 15, 2026Updated last week
- machine learning guided antigenic evolution prediction☆12Jun 19, 2023Updated 2 years ago
- ☆28Aug 8, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆23Mar 19, 2025Updated last year
- ☆17Mar 26, 2024Updated 2 years ago
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated last year
- ARTIC SARS-CoV-2 workflow and reporting☆51Apr 25, 2025Updated last year
- ☆15Jun 26, 2018Updated 7 years ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- LucaVirus: Modeling the Evolutionary and Functional Landscape of Viruses with a Unified Genome-Protein Language Model☆66Apr 28, 2026Updated 3 weeks ago
- Official repository for the ProteinGym benchmarks☆430Mar 25, 2026Updated 2 months ago
- ☆15May 29, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆37Jan 15, 2023Updated 3 years ago
- Code for our paper "Protein sequence design with a learned potential"☆83Sep 8, 2023Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Mar 25, 2023Updated 3 years ago
- A selenium spider for GISAID☆10Apr 10, 2023Updated 3 years ago
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Dec 11, 2021Updated 4 years ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆416Sep 3, 2023Updated 2 years ago
- ☆92Sep 25, 2024Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Dec 9, 2023Updated 2 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14May 15, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Estimating time trees from very large phylogenies☆28Jul 21, 2024Updated last year
- Scalable relaxed clock phylogenetic dating☆27Sep 3, 2025Updated 8 months ago
- ☆13Apr 1, 2026Updated last month
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆63Mar 15, 2026Updated 2 months ago
- ☆22Mar 5, 2025Updated last year
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year