OATML-Markslab / EVEscapeLinks
Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"
☆69Updated 2 years ago
Alternatives and similar repositories for EVEscape
Users that are interested in EVEscape are comparing it to the libraries listed below
Sorting:
- Evolutionary velocity with protein language models☆94Updated this week
- ColabFold protocol☆57Updated last year
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆46Updated 3 years ago
- Genomic language model predicts protein co-regulation and function☆84Updated 8 months ago
- ☆96Updated 5 months ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- ☆74Updated last year
- Feature map and function annotation of Proteins☆34Updated last year
- ☆82Updated 2 years ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 8 months ago
- Neural Networks for Protein Sequence Alignment☆132Updated last year
- Fast protein structure searching or your money back☆117Updated last month
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆76Updated 3 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆120Updated last year
- ☆74Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆39Updated 3 weeks ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆64Updated last year
- ☆91Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Multi-class signal peptide prediction and structure decoding model.☆98Updated 10 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated last week
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆76Updated 3 months ago
- ☆36Updated 10 months ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆57Updated 7 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- Fast and accurate protein structure prediction☆56Updated 10 months ago