Predicting Future Influenza Virus Sequences with Machine Learning
☆32Feb 11, 2018Updated 8 years ago
Alternatives and similar repositories for Flu-Prediction
Users that are interested in Flu-Prediction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 11 years ago
- An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.☆36Aug 23, 2023Updated 3 years ago
- Nextstrain build for avian influenza viruses☆29Aug 3, 2026Updated 3 weeks ago
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Jun 30, 2026Updated 2 months ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Real-time tracking of influenza evolution☆91Sep 8, 2023Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆33Sep 15, 2025Updated 11 months ago
- Influenza forecasts visualizer☆43Aug 14, 2026Updated 2 weeks ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- ☆11Apr 17, 2023Updated 3 years ago
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- This program can be used to parse the NCBI GenBank file to create a tabulated csv file.☆10Mar 4, 2019Updated 7 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆16Jan 9, 2019Updated 7 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Multiplex Primer Design☆13May 3, 2020Updated 6 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- Influenza genome analysis Nextflow workflow☆27Jun 3, 2026Updated 2 months ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated last month
- Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques☆22Apr 26, 2022Updated 4 years ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 4 months ago
- ggtree version of plotTree.R☆18Nov 12, 2018Updated 7 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆16Mar 17, 2023Updated 3 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 6 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆13Oct 29, 2022Updated 3 years ago
- Links to data science, bioinformatics, statistics, and machine learning resources☆18Aug 20, 2020Updated 6 years ago
- ☆20Nov 18, 2021Updated 4 years ago
- DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.☆12Jul 4, 2026Updated last month
- ☆22Jun 10, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 7 years ago
- Reference-guided multiple sequence alignment of viral genomes☆73May 30, 2026Updated 3 months ago
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Aug 12, 2026Updated 2 weeks ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆38Updated this week
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago