Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"
☆170Aug 24, 2023Updated 2 years ago
Alternatives and similar repositories for Tranception
Users that are interested in Tranception are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆79Oct 27, 2021Updated 4 years ago
- Official repository for the ProteinGym benchmarks☆440Mar 25, 2026Updated 3 months ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆100Jan 24, 2023Updated 3 years ago
- ☆259Jul 31, 2024Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆132Nov 19, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Official release of the ProGen models☆704Jun 2, 2026Updated 3 weeks ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆128Apr 23, 2026Updated 2 months ago
- ☆215Sep 24, 2024Updated last year
- Efficient evolution from protein language models☆226Aug 26, 2023Updated 2 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆103Apr 24, 2024Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆739Dec 11, 2022Updated 3 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- An evolutionary context-integrated deep learning framework for protein engineering☆71Jun 1, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆182Jun 17, 2023Updated 3 years ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- ☆97Oct 14, 2025Updated 8 months ago
- OmegaFold Release Code☆623Dec 12, 2022Updated 3 years ago
- ☆212Apr 21, 2025Updated last year
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆325Nov 15, 2025Updated 7 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆309Apr 20, 2026Updated 2 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆258Mar 26, 2026Updated 3 months ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,140Feb 7, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- VenusFSFP: Few-Shot Protein Fitness Prediction☆117Nov 18, 2025Updated 7 months ago
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"☆12Jul 18, 2023Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆203Mar 16, 2024Updated 2 years ago
- open source repository☆148Nov 30, 2023Updated 2 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆136Nov 17, 2021Updated 4 years ago
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 10 months ago
- Generative Models for Graph-Based Protein Design☆290Dec 24, 2020Updated 5 years ago
- VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5…☆36Mar 4, 2024Updated 2 years ago
- ☆77Sep 2, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A generative model for programmable protein design☆821Apr 11, 2024Updated 2 years ago
- A generative latent variable model for biological sequence families.☆254Mar 15, 2022Updated 4 years ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated last year
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆38Aug 7, 2023Updated 2 years ago
- ☆33Aug 12, 2024Updated last year
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Sep 28, 2024Updated last year
- ☆19Oct 4, 2022Updated 3 years ago