OATML-Markslab / TranceptionLinks
Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"
☆163Updated 2 years ago
Alternatives and similar repositories for Tranception
Users that are interested in Tranception are comparing it to the libraries listed below
Sorting:
- Generative Language Modeling for Antibody Design☆180Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆110Updated last year
- ☆255Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆184Updated last year
- MSA Transformer reproduction code☆91Updated 4 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆149Updated 9 months ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆133Updated 4 years ago
- AbLang: A language model for antibodies☆157Updated 2 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆127Updated 2 months ago
- ☆136Updated last year
- trRosetta for protein design☆183Updated 4 years ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆160Updated 3 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆272Updated last year
- ☆120Updated this week
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆265Updated 9 months ago
- Diffusion-based all-atom protein generative model.☆229Updated 5 months ago
- ☆208Updated 9 months ago
- ☆122Updated last year
- Protein design and variant prediction using autoregressive generative models☆118Updated 2 years ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆227Updated 2 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Updated 4 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆91Updated last year
- ☆109Updated 2 years ago
- ☆60Updated 3 years ago
- Compressing protein structures effectively with torsion angles☆186Updated last month
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆352Updated 2 years ago
- Dataset and package for working with protein-protein interactions in 3D☆104Updated 9 months ago
- ☆212Updated last year
- RoseTTAFold2 protein/nucleic acid complex prediction☆373Updated last year
- Aligning protein generative models with experimental fitness☆117Updated 3 months ago