IBM / fold2seqLinks
Code for Fold2Seq paper from ICML 2021
☆50Updated 3 years ago
Alternatives and similar repositories for fold2seq
Users that are interested in fold2seq are comparing it to the libraries listed below
Sorting:
- A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)☆64Updated 3 years ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆48Updated 3 years ago
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated 2 years ago
- Protein quality assessment using Graph Convolutional Networks☆29Updated 2 years ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated last year
- Database of Interacting Protein Structures (DIPS)☆102Updated last year
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆37Updated 4 years ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆36Updated 2 years ago
- An evolutionary context-integrated deep learning framework for protein engineering☆64Updated 3 years ago
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆105Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- ☆107Updated 2 years ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆56Updated last year
- ☆20Updated 3 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆104Updated 11 months ago
- ☆29Updated 5 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Updated 4 years ago
- Code for 'On Pre-trained Language Models For Antibody'☆33Updated 2 years ago
- MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphan…☆11Updated 2 years ago
- ☆35Updated 3 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆88Updated 2 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆59Updated last year
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21Updated 6 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆57Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- PointSite: a point cloud segmentation tool for identification of protein ligand binding atoms☆56Updated 2 years ago
- ☆130Updated 2 years ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆59Updated last year
- A protein 3D structure prediction application☆67Updated 4 years ago
- Multi-Scale Representation Learning on Proteins (NeurIPS 2021)☆48Updated 2 years ago