Alternatives and similar repositories for fold2seq

Users that are interested in fold2seq are comparing it to the libraries listed below

• phermosilla / IEConv_proteins
  Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures
  ☆49Updated 4 years ago
• baldassarreFe / graphqa
  Protein quality assessment using Graph Convolutional Networks
  ☆28Updated 3 years ago
• drorlab / DIPS
  Database of Interacting Protein Structures (DIPS)
  ☆103Updated 2 years ago
• kiharalab / GNN_DOVE
  Code for "Protein Docking Model Evaluation by Graph Neural Networks"
  ☆59Updated 2 years ago
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆53Updated 5 months ago
• BioinfoMachineLearning / DeepInteract
  A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)
  ☆64Updated 3 years ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆81Updated 2 years ago
• Shen-Lab / gcWGAN
  Guided Conditional Wasserstein GAN for De Novo Protein Design
  ☆35Updated 4 years ago
• lucidrains / tr-rosetta-pytorch
  Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
  ☆83Updated 4 years ago
• IBM / controlled-peptide-generation
  source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…
  ☆110Updated 4 months ago
• leeyang / ResPRE
  ResPRE is an algorithm for protein residue-residue contact-map prediction
  ☆21Updated 6 years ago
• HeliXonProtein / proximal-exploration
  PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"
  ☆37Updated 2 years ago
• luoyunan / ECNet
  An evolutionary context-integrated deep learning framework for protein engineering
  ☆70Updated 3 years ago
• fusong-ju / ProFOLD
  A protein 3D structure prediction application
  ☆67Updated 4 years ago
• wengong-jin / abdockgen
  ☆108Updated 2 years ago
• sarpaykent / GBPNet
  ☆21Updated 3 years ago
• prescient-design / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆58Updated last year
• instadeepai / FrameDiPT
  FrameDiPT: an SE(3) diffusion model for protein structure inpainting
  ☆58Updated 2 years ago
• Graylab / deepH3-distances-orientations
  ☆35Updated 4 years ago
• skinnider / low-data-generative-models
  ☆21Updated 4 years ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆110Updated last year
• XieResearchGroup / DISAE
  MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphan…
  ☆11Updated 3 years ago
• lucidrains / ddpm-ipa-protein-generation
  Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…
  ☆89Updated 3 years ago
• vsomnath / holoprot
  Multi-Scale Representation Learning on Proteins (NeurIPS 2021)
  ☆49Updated 2 years ago
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆61Updated last year
• MattMcPartlon / protein-docking
  Code for "A Deep Learning Framework for Flexible Docking and Design"
  ☆16Updated 3 years ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆94Updated 2 years ago
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆43Updated 4 years ago
• dqwang122 / EATLM
  Code for 'On Pre-trained Language Models For Antibody'
  ☆32Updated 3 years ago
• DeepGraphLearning / CGCF-ConfGen
  Learning Neural Generative Dynamics for Molecular Conformation Generation (ICLR 2021)
  ☆22Updated 4 years ago