IBM / fold2seq

Related projects: ⓘ

• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆44Updated last year
• phermosilla / IEConv_proteins
  Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures
  ☆49Updated 2 years ago
• RFOLD / RhoFold
  ☆55Updated this week
• baldassarreFe / graphqa
  Protein quality assessment using Graph Convolutional Networks
  ☆28Updated last year
• skinnider / low-data-generative-models
  ☆17Updated 3 years ago
• drorlab / DIPS
  Database of Interacting Protein Structures (DIPS)
  ☆91Updated 7 months ago
• HeliXonProtein / proximal-exploration
  PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"
  ☆35Updated last year
• leeyang / ResPRE
  ResPRE is an algorithm for protein residue-residue contact-map prediction
  ☆20Updated 5 years ago
• sarpaykent / GBPNet
  ☆19Updated 2 years ago
• BioinfoMachineLearning / DeepInteract
  A geometric deep learning pipeline for predicting protein interface contacts. (ICLR 2022)
  ☆63Updated 2 years ago
• Shen-Lab / gcWGAN
  Guided Conditional Wasserstein GAN for De Novo Protein Design
  ☆37Updated 3 years ago
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆50Updated 3 months ago
• aws-samples / lm-gvp
  LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure
  ☆48Updated 6 months ago
• Minys233 / Dynaformer
  ☆25Updated 2 months ago
• XieResearchGroup / DISAE
  MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphan…
  ☆11Updated last year
• wengong-jin / abdockgen
  ☆104Updated last year
• kiharalab / GNN_DOVE
  Code for "Protein Docking Model Evaluation by Graph Neural Networks"
  ☆56Updated last year
• ElwynWang / DeepFragLib
  ☆29Updated 4 years ago
• BioinfoMachineLearning / EnQA
  A 3D-equivariant neural network for protein structure accuracy estimation
  ☆18Updated last year
• lucidrains / tr-rosetta-pytorch
  Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
  ☆79Updated 3 years ago
• PointSite / PointSite
  PointSite: a point cloud segmentation tool for identification of protein ligand binding atoms
  ☆51Updated last year
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆76Updated last year
• luoyunan / ECNet
  An evolutionary context-integrated deep learning framework for protein engineering
  ☆61Updated 2 years ago
• xinformatics / alphafold
  Open source code for AlphaFold to extract protein embeddings
  ☆25Updated 3 years ago
• yarongef / DistilProtBert
  DistilProtBert implementation, a distilled version of ProtBert model.
  ☆15Updated last year
• conradry / pytorch-rgn
  Recurrent Geometric Network in Pytorch
  ☆29Updated 3 years ago
• BioinfoMachineLearning / CDPred
  Deep transformer for predicting interchain residue-residue distances of protein complexes
  ☆12Updated 6 months ago
• DeepGraphLearning / DiffPack
  Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
  ☆72Updated 9 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆116Updated 11 months ago
• instadeepai / FrameDiPT
  FrameDiPT: an SE(3) diffusion model for protein structure inpainting
  ☆49Updated 7 months ago