Pyro models of SARS-CoV-2 variants
☆77Jul 26, 2024Updated last year
Alternatives and similar repositories for pyro-cov
Users that are interested in pyro-cov are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"☆71Oct 11, 2023Updated 2 years ago
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated 2 weeks ago
- ☆16May 12, 2023Updated 2 years ago
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Ultrafast Sample Placement on Existing Trees☆140Feb 6, 2026Updated 2 months ago
- Daily analyses of genomic SARS-CoV-2 data☆15Nov 8, 2022Updated 3 years ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 2 years ago
- Programmatically interact with the GISAID database.☆80Aug 5, 2025Updated 8 months ago
- machine learning guided antigenic evolution prediction☆12Jun 19, 2023Updated 2 years ago
- Evolutionary velocity with protein language models☆98Dec 9, 2025Updated 4 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Aug 31, 2022Updated 3 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆253Updated this week
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Mar 5, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆38Jan 12, 2026Updated 3 months ago
- Language modeling of viral evolution☆150Mar 24, 2023Updated 3 years ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- A web platform to detect and analyze variants of SARS-CoV-2☆61Apr 10, 2026Updated last week
- Virus discovery☆17Apr 10, 2026Updated last week
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆18Nov 24, 2025Updated 4 months ago
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆21Nov 8, 2024Updated last year
- The ARTIC fieldbioinformatics pipeline☆131Apr 10, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆42Mar 24, 2026Updated 3 weeks ago
- ☆20Apr 9, 2021Updated 5 years ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- Bayesian optimization of discrete sequences☆21Mar 27, 2022Updated 4 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Apr 24, 2023Updated 2 years ago
- A tool for exploring large trees in the browser☆131Updated this week
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆251Updated this week
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Dec 9, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Quality control for phylogenetic analyses☆13Mar 16, 2026Updated last month
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Mar 31, 2026Updated 2 weeks ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 2 months ago
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- Infectious disease model library and utilities☆15Sep 2, 2022Updated 3 years ago
- ☆22Mar 5, 2025Updated last year
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Nov 10, 2023Updated 2 years ago