Alternatives and similar repositories for EVE

Users that are interested in EVE are comparing it to the libraries listed below

• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆88Updated last year
• ntranoslab / esm-variants
  ☆86Updated 2 years ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆247Updated 3 years ago
• a96123155 / UTR-LM
  ☆95Updated last year
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆105Updated 4 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆97Updated 2 months ago
• mxfold / mxfold2
  MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
  ☆159Updated this week
• uci-cbcl / UFold
  ☆78Updated 9 months ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆297Updated last year
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆321Updated this week
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆135Updated last year
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆220Updated 2 years ago
• mana438 / RNABERT
  ☆57Updated 2 years ago
• churchlab / Deep_diversification_AAV
  Bioinformatics code for paper associated with deep diversification of AAV
  ☆42Updated last year
• brianhie / viral-mutation
  Language modeling of viral evolution
  ☆148Updated 2 years ago
• LinearDesignSoftware / LinearDesign
  The LinearDesign mRNA design software.
  ☆200Updated last year
• Bruce-ywj / ERNIE-RNA
  Code of a structure-enhanced RNA language model named ERNIE-RNA
  ☆36Updated 2 months ago
• jaswindersingh2 / SPOT-RNA
  RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
  ☆107Updated 8 months ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆59Updated 3 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆60Updated last month
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆143Updated last year
• kkyamada / bert-rbp
  ☆29Updated 3 years ago
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆155Updated 4 months ago
• kuixu / PrismNet
  Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
  ☆66Updated last year
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆109Updated last month
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆296Updated 3 months ago
• ychuest / Awesome-LLMs-meet-genomes
  Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…
  ☆123Updated this week
• Genentech / BRAID
  BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.
  ☆219Updated 5 months ago
• instadeepai / InstaNovo
  De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
  ☆112Updated last month
• pgmikhael / protgps
  ☆99Updated 7 months ago