Alternatives and similar repositories for EVE:

Users that are interested in EVE are comparing it to the libraries listed below

• ntranoslab / esm-variants
  ☆72Updated last year
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆214Updated 3 years ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆73Updated last year
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆231Updated 3 months ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆100Updated 3 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• a96123155 / UTR-LM
  ☆79Updated 6 months ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆197Updated last year
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆262Updated last month
• mana438 / RNABERT
  ☆51Updated last year
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆75Updated 3 weeks ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆97Updated 6 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆84Updated 2 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆52Updated 11 months ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆120Updated 5 months ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆52Updated 2 years ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆148Updated last year
• brianhie / viral-mutation
  Language modeling of viral evolution
  ☆143Updated 2 years ago
• kuixu / alphafold
  Install alphafold on the local machine, get out of docker.
  ☆101Updated 3 years ago
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆127Updated 10 months ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆108Updated 2 years ago
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆28Updated 2 years ago
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆61Updated last year
• MachineLearningLifeScience / meaningful-protein-representations
  ☆108Updated 3 years ago
• aqlaboratory / rgn2
  ☆104Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆124Updated 3 years ago
• churchlab / Deep_diversification_AAV
  Bioinformatics code for paper associated with deep diversification of AAV
  ☆39Updated 4 months ago
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆107Updated 9 months ago
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆259Updated 2 weeks ago
• mxfold / mxfold2
  MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
  ☆128Updated last week