Alternatives and similar repositories for EVE

Users that are interested in EVE are comparing it to the libraries listed below

• ntranoslab / esm-variants
  ☆76Updated last year
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆80Updated last year
• a96123155 / UTR-LM
  ☆90Updated 9 months ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆230Updated 3 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• LinearDesignSoftware / LinearDesign
  The LinearDesign mRNA design software.
  ☆188Updated last year
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆55Updated 3 years ago
• kkyamada / bert-rbp
  ☆29Updated 2 years ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆124Updated 8 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆93Updated last year
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆102Updated 4 years ago
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆132Updated last year
• mxfold / mxfold2
  MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
  ☆138Updated last month
• Genentech / BRAID
  BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.
  ☆207Updated last month
• brianhie / viral-mutation
  Language modeling of viral evolution
  ☆144Updated 2 years ago
• kuixu / PrismNet
  Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
  ☆65Updated last year
• churchlab / Deep_diversification_AAV
  Bioinformatics code for paper associated with deep diversification of AAV
  ☆41Updated 8 months ago
• viragbioinfo / IMMREP_2022_TCRSpecificity
  ☆20Updated 2 years ago
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆36Updated last year
• instadeepai / InstaNovo
  De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
  ☆91Updated last month
• mana438 / RNABERT
  ☆55Updated last year
• pgmikhael / protgps
  ☆89Updated last month
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆273Updated 2 weeks ago
• idekerlab / DrugCell
  A visible neural network model for drug response prediction
  ☆144Updated last year
• bm2-lab / PanPep
  ☆49Updated last year
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆262Updated 7 months ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆211Updated last year
• jaswindersingh2 / SPOT-RNA
  RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
  ☆105Updated 2 months ago
• Adibvafa / CodonTransformer
  CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 speci…
  ☆166Updated last week
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆89Updated 6 months ago