OATML-Markslab / EVELinks
Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
☆183Updated last year
Alternatives and similar repositories for EVE
Users that are interested in EVE are comparing it to the libraries listed below
Sorting:
- ☆80Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- ☆90Updated 11 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- A generative latent variable model for biological sequence families.☆241Updated 3 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆56Updated 3 years ago
- Evolutionary velocity with protein language models☆94Updated last year
- ☆57Updated 2 years ago
- Neural Networks for Protein Sequence Alignment☆128Updated 10 months ago
- Genomic Pre-trained Network☆292Updated last week
- ☆29Updated 2 years ago
- Repository for mRNA Paper and CodonBERT publication.☆134Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆270Updated 9 months ago
- ☆73Updated 5 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆101Updated last month
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆144Updated 3 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆103Updated 4 years ago
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆215Updated last month
- ☆95Updated 3 months ago
- Language modeling of viral evolution☆149Updated 2 years ago
- Multi-class signal peptide prediction and structure decoding model.☆95Updated 8 months ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆65Updated last year
- RiboNucleic Acid (RNA) Language Model☆128Updated 4 months ago
- The LinearDesign mRNA design software.☆191Updated last year
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated 2 years ago
- Bioinformatics code for paper associated with deep diversification of AAV☆40Updated 10 months ago
- Efficient evolution from protein language models☆215Updated 2 years ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆100Updated 2 weeks ago
- Evolutionary couplings from protein and RNA sequence alignments☆282Updated last month
- CodonTransformer (1M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression☆179Updated 2 months ago