Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
☆199Mar 16, 2024Updated 2 years ago
Alternatives and similar repositories for EVE
Users that are interested in EVE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆68Sep 13, 2022Updated 3 years ago
- Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"☆71Oct 11, 2023Updated 2 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆301Oct 23, 2025Updated 5 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆166Aug 24, 2023Updated 2 years ago
- Official repository for the ProteinGym benchmarks☆413Mar 25, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆77Oct 27, 2021Updated 4 years ago
- Mutation effects predicted from sequence co-variation☆75Sep 3, 2017Updated 8 years ago
- Language modeling of viral evolution☆150Mar 24, 2023Updated 3 years ago
- A generative latent variable model for biological sequence families.☆250Mar 15, 2022Updated 4 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆128Nov 19, 2025Updated 4 months ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Genomic Pre-trained Network☆337Mar 25, 2026Updated 2 weeks ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆135Nov 17, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5…☆35Mar 4, 2024Updated 2 years ago
- Evolutionary velocity with protein language models☆98Dec 9, 2025Updated 4 months ago
- ☆17Feb 15, 2026Updated last month
- ☆88Sep 20, 2023Updated 2 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,034Feb 7, 2024Updated 2 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 3 months ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 5 months ago
- ☆136Aug 8, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆43Jun 17, 2025Updated 9 months ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- ☆40Sep 17, 2024Updated last year
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆56Apr 10, 2025Updated last year
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Sep 28, 2024Updated last year
- Official release of the ProGen models☆698Aug 4, 2023Updated 2 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,296May 22, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆127Updated this week
- Coloring molecules with explainable artificial intelligence☆16Feb 8, 2021Updated 5 years ago
- ☆74Mar 13, 2026Updated last month
- Learning the language of protein-protein interactions☆142Jan 12, 2026Updated 3 months ago
- Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF☆20Jun 13, 2025Updated 10 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆31Nov 25, 2024Updated last year
- ☆28May 24, 2024Updated last year