☆12Dec 2, 2024Updated last year
Alternatives and similar repositories for MaskedProteinEnT
Users that are interested in MaskedProteinEnT are comparing it to the libraries listed below
Sorting:
- ☆10May 22, 2024Updated last year
- Features Based Conformational Clustering of MD trajectories. See details at:☆10Nov 20, 2025Updated 3 months ago
- Synthetic Accessibility via Fragment Assembly Generation☆19Feb 1, 2026Updated last month
- ☆12Mar 28, 2025Updated 11 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆13Jul 9, 2025Updated 7 months ago
- ☆13May 19, 2025Updated 9 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Oct 24, 2023Updated 2 years ago
- Structure prediction of alternative protein conformations☆82Feb 24, 2025Updated last year
- ☆11Aug 3, 2023Updated 2 years ago
- open source repository☆146Nov 30, 2023Updated 2 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆26Mar 21, 2024Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆30Dec 21, 2023Updated 2 years ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆13Apr 23, 2024Updated last year
- ☆11Aug 26, 2024Updated last year
- ☆15Mar 28, 2025Updated 11 months ago
- Foundation model-driven lab☆20Apr 13, 2025Updated 10 months ago
- Machine learning-driven antibody design☆63Jul 5, 2023Updated 2 years ago
- Research repository to the publication: Navigating the Design Space of Equivariant Diffusion-Based Generative Models for De Novo 3D Molec…☆14Apr 2, 2024Updated last year
- ☆18Oct 30, 2023Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Feb 2, 2026Updated 3 weeks ago
- Graph Network for protein-protein interface including language model features☆34Mar 26, 2024Updated last year
- Run OpenMM with forces provided by any Python program☆39Dec 25, 2024Updated last year
- ☆19Mar 16, 2025Updated 11 months ago
- MpbPPI: A multi-task pre-training-based equivariant approach for the prediction of the effect of amino acid mutations on protein-protein …☆18Oct 6, 2024Updated last year
- ☆18Aug 8, 2024Updated last year
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆48Jun 30, 2025Updated 8 months ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆125Feb 26, 2025Updated last year
- Python package to atom map, correct and suggest enzymatic reactions☆42Apr 11, 2024Updated last year
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆21Nov 8, 2024Updated last year
- Solvent Accessible Surface Areas of Biomolecules and their Complexes☆19Feb 21, 2026Updated last week
- Epitope Prediction Pipeline and analysis tools built around AlphaFold 2☆20May 9, 2024Updated last year
- ☆37Jan 15, 2023Updated 3 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆328Oct 28, 2024Updated last year
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆23Mar 19, 2025Updated 11 months ago
- A 3D-equivariant neural network for protein structure accuracy estimation☆20Feb 24, 2023Updated 3 years ago
- ☆16Dec 10, 2025Updated 2 months ago
- Improved antibody structure-based design using inverse folding☆153Dec 9, 2025Updated 2 months ago