Bitbol-Lab / Phylogeny-MSA-TransformerLinks
Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www.nature.com/articles/s41467-022-34032-y)
☆17Updated 5 months ago
Alternatives and similar repositories for Phylogeny-MSA-Transformer
Users that are interested in Phylogeny-MSA-Transformer are comparing it to the libraries listed below
Sorting:
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- Fast protein domain structure embedding+search tool☆21Updated last month
- ☆22Updated 2 years ago
- ☆41Updated 9 months ago
- A domain parser for Alphafold models☆38Updated last year
- ☆22Updated last month
- ☆30Updated last year
- Detection of remote homology by comparison of protein language model representations☆54Updated 7 months ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- ColabFold protocol☆52Updated 8 months ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆26Updated last year
- ☆24Updated 2 years ago
- Long disorder consensus predictor☆15Updated 4 months ago
- ☆30Updated last year
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆37Updated 5 months ago
- Next generation sequence parameter library for proteins☆32Updated last week
- ☆36Updated last week
- ☆70Updated 9 months ago
- ☆35Updated 6 months ago
- ☆21Updated last year
- DeepECtransformer☆26Updated last year
- ☆68Updated 9 months ago
- Code for LazyAF pipeline☆20Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆45Updated 3 years ago
- Fragment binding prediction with ColabFold☆35Updated 3 months ago
- ☆17Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆89Updated last year
- Geometry-aware protein binding site predictor☆20Updated 10 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆58Updated 4 months ago