Alternatives and similar repositories for Phylogeny-MSA-Transformer:

Users that are interested in Phylogeny-MSA-Transformer are comparing it to the libraries listed below

• Doudna-lab / GARNET_DL
  ☆33Updated last month
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆37Updated last year
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• PDB-REDO / AlphaBridge
  ☆32Updated 2 months ago
• tymor22 / tm-vec
  ☆65Updated 4 months ago
• SNU-CSSB / RF2-Lite
  ☆25Updated 8 months ago
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆16Updated 2 years ago
• JudeWells / chainsaw
  ☆31Updated 4 months ago
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆19Updated last year
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆47Updated 2 months ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆18Updated this week
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆34Updated 4 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆27Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆24Updated last year
• clairemcwhite / vcmsa
  ☆29Updated last year
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆33Updated last week
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆12Updated last month
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆29Updated 2 weeks ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆23Updated last year
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆48Updated 4 months ago
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆41Updated last month
• ProteinUniverseAtlas / AFDB90v4
  ☆17Updated last year
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆26Updated 2 months ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆48Updated 3 months ago
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆13Updated last month
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆26Updated last month
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆33Updated 3 weeks ago