Bitbol-Lab / Phylogeny-MSA-Transformer
Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www.nature.com/articles/s41467-022-34032-y)
☆16Updated last year
Related projects: ⓘ
- ☆20Updated last year
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆15Updated last year
- ☆37Updated 3 weeks ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆35Updated 7 months ago
- Benchmarking Pipeline for Prediction of Protein-Protein Interactions☆11Updated 2 years ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated 9 months ago
- ☆24Updated 2 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆20Updated 3 months ago
- Spectral Framework For AI Model Evaluation☆24Updated 4 months ago
- Code for LazyAF pipeline☆21Updated 7 months ago
- ☆28Updated 11 months ago
- Protein Structure Archiver☆12Updated 3 months ago
- Detection of remote homology by comparison of protein language model representations☆41Updated last week
- ☆62Updated 2 months ago
- ☆28Updated 3 weeks ago
- ☆19Updated last year
- Deep learning prediction of enzyme optimum pH☆22Updated 9 months ago
- ColabFold protocol☆22Updated 2 months ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆14Updated 3 years ago
- DeepECtransformer☆20Updated 11 months ago
- Geometry-aware protein binding site predictor☆14Updated 3 weeks ago
- Insights into the inner workings of transformer models for protein function prediction☆12Updated 7 months ago
- ☆15Updated last year
- Feature map and function annotation of Proteins☆27Updated 3 months ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆31Updated last year
- A domain parser for Alphafold models☆29Updated 9 months ago
- Protein Design by Machine Learning guided Directed Evolution☆22Updated last month
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆58Updated 2 months ago
- ☆14Updated last month
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆26Updated last year