Alternatives and similar repositories for Phylogeny-MSA-Transformer:

Users that are interested in Phylogeny-MSA-Transformer are comparing it to the libraries listed below

• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆29Updated 3 months ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• KULL-Centre / _2022_functional-sites-cagiada
  ☆21Updated last year
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆37Updated 11 months ago
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆33Updated last week
• Doudna-lab / GARNET_DL
  ☆33Updated this week
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆16Updated last year
• tymor22 / tm-vec
  ☆66Updated 3 months ago
• SNU-CSSB / RF2-Lite
  ☆25Updated 7 months ago
• PDB-REDO / AlphaBridge
  ☆30Updated last month
• JudeWells / chainsaw
  ☆30Updated 3 months ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆47Updated last month
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆29Updated last month
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆26Updated this week
• TattaBio / OMG
  ☆30Updated 4 months ago
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆13Updated this week
• ProteinUniverseAtlas / AFDB90v4
  ☆17Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆23Updated last year
• refresh-bio / protestar
  Protein Structure Archiver
  ☆12Updated 7 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆30Updated 7 months ago
• jurgjn / af-protein-universe
  ☆21Updated last year
• clairemcwhite / vcmsa
  ☆29Updated last year
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆18Updated this week
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆27Updated last year
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆29Updated 2 years ago
• swanss / FragFold
  ☆18Updated 2 weeks ago
• eva-smorodina / antibody_developability
  ☆9Updated last year
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆40Updated last week
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆31Updated 3 months ago
• proteinphysiologylab / frustratometeR
  ☆33Updated 3 months ago