Alternatives and similar repositories for Phylogeny-MSA-Transformer

Users that are interested in Phylogeny-MSA-Transformer are comparing it to the libraries listed below

• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆17Updated 2 years ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• PDB-REDO / AlphaBridge
  ☆41Updated last week
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated 2 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆55Updated 9 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated 3 months ago
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated 2 weeks ago
• clairemcwhite / vcmsa
  ☆30Updated last year
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆15Updated 8 months ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆53Updated 11 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆40Updated last year
• ProteinUniverseAtlas / AFDB90v4
  ☆17Updated 2 years ago
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated 3 weeks ago
• JudeWells / chainsaw
  ☆43Updated 11 months ago
• TattaBio / gLM2
  ☆71Updated 11 months ago
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• BioColLab / PFresGO
  ☆20Updated last year
• Doudna-lab / GARNET_DL
  ☆36Updated 8 months ago
• vttresearch / ActSeek
  Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.
  ☆25Updated 3 months ago
• UCLOrengoGroup / cath-alphaflow
  ☆22Updated 4 months ago
• refresh-bio / protestar
  Protein Structure Archiver
  ☆12Updated last week
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆26Updated 2 years ago
• tymor22 / tm-vec
  ☆68Updated 11 months ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆30Updated last year
• TattaBio / OMG
  ☆44Updated last year
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆35Updated this week
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆52Updated last month
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated last week
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago