Alternatives and similar repositories for autolin:

Users that are interested in autolin are comparing it to the libraries listed below

• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆22Updated last week
• bacpop / unitig-caller
  Methods to determine sequence element (unitig) presence/absence
  ☆20Updated 4 months ago
• salzberg-lab / bolotie
  SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
  ☆13Updated last year
• dhelekal / CaveDive
  ☆17Updated 10 months ago
• songlab-cal / swga2
  ☆17Updated last year
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated 3 months ago
• jonas-fuchs / virHEAT
  Visualize microbial evolution at the SNP level!
  ☆14Updated 5 months ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 2 months ago
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 6 years ago
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆30Updated 2 weeks ago
• moritzbuck / mOTUlizer
  Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin
  ☆15Updated 7 months ago
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated last week
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 3 months ago
• AllTheBacteria / Phylign
  Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…
  ☆12Updated 11 months ago
• niemasd / ViralConsensus
  Fast viral consensus genome reconstruction
  ☆22Updated 4 months ago
• rcedgar / newick
  Manipulate and generate figures for trees in Newick format
  ☆21Updated 3 months ago
• GuyBaele / SpreadGL
  Main development repository for SpreadGL
  ☆18Updated 6 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆55Updated last week
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆37Updated this week
• ThomasDOtto / ILRA
  Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…
  ☆13Updated 5 months ago
• amkram / shusher
  Private, browser-based placement of genome sequences on phylogenetic trees using UShER.
  ☆10Updated 5 months ago
• stjacqrm / centroid
  tool to determine optimal refrerence genome given a set of fasta files
  ☆14Updated last year
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• pg-space / panspace
  Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes
  ☆10Updated last week
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆37Updated last month
• uio-bmi / NucBreak
  Location of structural errors in a genome assembly and structural variations between a pair of genomes
  ☆11Updated 5 years ago
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆23Updated last year
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated last year
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆37Updated 2 weeks ago
• rpetit3 / assembly-scan
  Generate basic stats for an assembly.
  ☆11Updated 2 years ago