Alternatives and similar repositories for SARS-CoV-2-RBD_DMS

Users that are interested in SARS-CoV-2-RBD_DMS are comparing it to the libraries listed below

• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 2 weeks ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• proteinphysiologylab / frustratometeR
  ☆37Updated 6 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆55Updated 8 months ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆57Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 8 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• SNU-CSSB / RF2-Lite
  ☆31Updated last year
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆56Updated 11 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆34Updated last year
• Doudna-lab / GARNET_DL
  ☆36Updated 11 months ago
• TattaBio / gLM2
  ☆75Updated last year
• greener-group / progres
  Fast protein structure searching or your money back
  ☆118Updated 2 months ago
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆40Updated last month
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆65Updated 5 months ago
• OATML-Markslab / EVEscape
  Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"
  ☆69Updated 2 years ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆76Updated 3 months ago
• tymor22 / tm-vec
  ☆74Updated last year
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated 2 years ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆34Updated 3 months ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆53Updated 5 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 4 months ago
• JudeWells / chainsaw
  ☆46Updated last year
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆28Updated 9 months ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆110Updated last month
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆46Updated 2 years ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆77Updated 4 months ago