tbepler / prose
Multi-task and masked language model-based protein sequence embedding models.
☆100Updated 3 years ago
Alternatives and similar repositories for prose:
Users that are interested in prose are comparing it to the libraries listed below
- ☆99Updated 8 months ago
- Efficient evolution from protein language models☆195Updated last year
- ☆104Updated last year
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆110Updated last year
- Public repository describing training and testing of AntiBERTa.☆58Updated last year
- Repository for publicly available deep learning models developed in Rosetta community☆111Updated 3 years ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆148Updated last year
- ☆51Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆228Updated 3 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆59Updated 8 months ago
- ☆123Updated last year
- trRosetta for protein design☆177Updated 3 years ago
- AbLang: A language model for antibodies☆137Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆96Updated 6 months ago
- Predict the structure of immune receptor proteins☆133Updated 2 months ago
- Generative Language Modeling for Antibody Design☆144Updated 5 months ago
- predicting peptide-protein interactions☆128Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 4 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆126Updated this week
- ☆108Updated 3 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆124Updated 3 years ago
- Masif seed paper repository☆148Updated last year
- Protein language model trained on coding DNA☆46Updated 5 months ago
- A Python package for extracting protein sequence features☆58Updated 2 years ago
- Code for ColabDock paper☆137Updated 5 months ago
- Convenience Python APIs for antibody numbering using ANARCI☆94Updated 2 months ago
- MSA Transformer reproduction code☆77Updated 3 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆61Updated last year
- PaccMann models for protein language modeling☆42Updated 3 years ago
- RiboNucleic Acid (RNA) Language Model☆92Updated last week