tbepler / proseLinks
Multi-task and masked language model-based protein sequence embedding models.
☆102Updated 4 years ago
Alternatives and similar repositories for prose
Users that are interested in prose are comparing it to the libraries listed below
Sorting:
- ☆107Updated last year
- Efficient evolution from protein language models☆210Updated last year
- ☆110Updated 3 years ago
- AbLang: A language model for antibodies☆143Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆100Updated last week
- Unconstrained lattice antibody-antigen bindings generator☆110Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 4 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆126Updated 3 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 11 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆73Updated 4 years ago
- Public repository describing training and testing of AntiBERTa.☆59Updated 2 years ago
- predicting peptide-protein interactions☆132Updated last year
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆64Updated last year
- ☆109Updated last year
- Repository for publicly available deep learning models developed in Rosetta community☆117Updated 3 years ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆152Updated last year
- ☆69Updated 2 months ago
- trRosetta for protein design☆182Updated 4 years ago
- ☆127Updated 4 years ago
- PaccMann models for protein language modeling☆42Updated 3 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆108Updated last year
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆113Updated last year
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆160Updated 2 years ago
- Generative Language Modeling for Antibody Design☆157Updated 9 months ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆196Updated 2 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆135Updated 2 weeks ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆152Updated 2 months ago
- Repository for mRNA Paper and CodonBERT publication.☆131Updated last year
- A Python package for extracting protein sequence features☆59Updated 2 years ago