tbepler / proseLinks
Multi-task and masked language model-based protein sequence embedding models.
☆104Updated 4 years ago
Alternatives and similar repositories for prose
Users that are interested in prose are comparing it to the libraries listed below
Sorting:
- ☆108Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Updated 5 years ago
- ☆111Updated 3 years ago
- Unconstrained lattice antibody-antigen bindings generator☆111Updated last month
- Efficient evolution from protein language models☆217Updated 2 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆130Updated 4 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆75Updated 5 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆106Updated this week
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- Protein sequence classification with self-supervised pretraining☆82Updated 4 years ago
- A generative latent variable model for biological sequence families.☆244Updated 3 years ago
- AbLang: A language model for antibodies☆155Updated 2 years ago
- RiboNucleic Acid (RNA) Language Model☆146Updated 2 months ago
- trRosetta for protein design☆183Updated 4 years ago
- ☆127Updated 4 years ago
- Convenience Python APIs for antibody numbering using ANARCI☆111Updated 7 months ago
- predicting peptide-protein interactions☆136Updated 2 years ago
- ☆118Updated last year
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆167Updated 2 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆111Updated 2 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆121Updated 4 years ago
- ☆77Updated 8 months ago
- Deep functional residue identification☆343Updated 2 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆154Updated this week
- ☆59Updated 3 years ago
- A Python package for extracting protein sequence features☆62Updated 3 years ago
- Protein language model trained on coding DNA☆52Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆84Updated last year
- Evolutionary velocity with protein language models☆94Updated 2 weeks ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆75Updated 2 years ago