tbepler / proseLinks
Multi-task and masked language model-based protein sequence embedding models.
☆102Updated 4 years ago
Alternatives and similar repositories for prose
Users that are interested in prose are comparing it to the libraries listed below
Sorting:
- ☆107Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆102Updated 2 weeks ago
- Efficient evolution from protein language models☆212Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 4 years ago
- ☆110Updated 3 years ago
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆129Updated 3 years ago
- Unconstrained lattice antibody-antigen bindings generator☆110Updated last year
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆163Updated 2 years ago
- AbLang: A language model for antibodies☆146Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆73Updated 4 years ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆156Updated last year
- Convenience Python APIs for antibody numbering using ANARCI☆105Updated 3 months ago
- predicting peptide-protein interactions☆134Updated last year
- Repository for publicly available deep learning models developed in Rosetta community☆117Updated 3 years ago
- Repository for mRNA Paper and CodonBERT publication.☆134Updated last year
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆199Updated 3 months ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆109Updated last year
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆105Updated 3 months ago
- ☆69Updated 4 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated last year
- RiboNucleic Acid (RNA) Language Model☆120Updated 2 months ago
- Protein language model trained on coding DNA☆49Updated 10 months ago
- trRosetta for protein design☆182Updated 4 years ago
- ☆113Updated last year
- ☆56Updated last year
- ☆127Updated 4 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆140Updated 2 months ago
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- Generative Language Modeling for Antibody Design☆161Updated 10 months ago