tbepler / proseLinks
Multi-task and masked language model-based protein sequence embedding models.
☆102Updated 4 years ago
Alternatives and similar repositories for prose
Users that are interested in prose are comparing it to the libraries listed below
Sorting:
- ☆107Updated last year
- ☆110Updated 3 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 5 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆104Updated last week
- Efficient evolution from protein language models☆213Updated 2 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆129Updated 3 years ago
- Unconstrained lattice antibody-antigen bindings generator☆110Updated last year
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆74Updated 4 years ago
- AbLang: A language model for antibodies☆147Updated last year
- ☆113Updated last year
- predicting peptide-protein interactions☆134Updated last year
- ☆57Updated last year
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆110Updated last year
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆163Updated 2 years ago
- Convenience Python APIs for antibody numbering using ANARCI☆105Updated 3 months ago
- ☆59Updated 2 years ago
- ☆127Updated 4 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆67Updated 2 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆140Updated 2 months ago
- trRosetta for protein design☆182Updated 4 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆119Updated 3 years ago
- Protein design and variant prediction using autoregressive generative models☆111Updated last year
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- Protein language model trained on coding DNA☆49Updated 10 months ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆200Updated 4 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated last year
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆158Updated last year
- PaccMann models for protein language modeling☆43Updated 3 years ago
- ☆90Updated 11 months ago