brianhie / evolocityLinks
Evolutionary velocity with protein language models
☆93Updated last year
Alternatives and similar repositories for evolocity
Users that are interested in evolocity are comparing it to the libraries listed below
Sorting:
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆89Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆99Updated 3 months ago
- ☆70Updated 9 months ago
- ☆35Updated 6 months ago
- ☆68Updated 9 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆79Updated last year
- A domain parser for Alphafold models☆38Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated 7 months ago
- Neural Networks for Protein Sequence Alignment☆123Updated 8 months ago
- Biological prediction models made simple.☆44Updated this week
- ☆74Updated last year
- Geometric deep learning of protein–DNA binding specificity☆76Updated 3 months ago
- Protein language model trained on coding DNA☆47Updated 8 months ago
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆45Updated 3 years ago
- Fast protein structure searching or your money back☆108Updated 3 months ago
- MMseqs2 app to run on your workstation or servers☆87Updated last week
- Detection of remote homology by comparison of protein language model representations☆54Updated 7 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 7 months ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆104Updated last month
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated 11 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆64Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆58Updated 4 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 3 months ago
- Draw RNA secondary structures in python.☆48Updated 3 weeks ago
- Predict the structure of immune receptor proteins☆51Updated 8 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆57Updated 7 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆113Updated 10 months ago
- ☆41Updated 9 months ago