brianhie / evolocity
Evolutionary velocity with protein language models
☆84Updated last year
Alternatives and similar repositories for evolocity:
Users that are interested in evolocity are comparing it to the libraries listed below
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆81Updated 10 months ago
- Mutation effects predicted from sequence co-variation☆63Updated 7 years ago
- Fast protein structure searching or your money back☆95Updated this week
- ☆65Updated 4 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆52Updated 2 months ago
- ☆33Updated last month
- ☆57Updated 4 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆69Updated 10 months ago
- ☆72Updated last year
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆43Updated 2 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆53Updated 7 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 2 months ago
- Draw RNA secondary structures in python.☆46Updated 5 months ago
- Feature map and function annotation of Proteins☆31Updated 8 months ago
- Multi-class signal peptide prediction and structure decoding model.☆83Updated 2 weeks ago
- ☆49Updated 8 months ago
- Transmembrane proteins predicted through Language Model embeddings☆33Updated 3 weeks ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆33Updated last week
- GraphPart, a data partitioning method for ML on biological sequences☆24Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆83Updated 5 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆85Updated 6 months ago
- ☆31Updated 4 months ago
- RNA Multiple Sequence Alignment☆32Updated last year
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆46Updated last year
- ☆44Updated 2 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆82Updated last year
- Protein language model trained on coding DNA☆46Updated 4 months ago
- Protein 3D structure prediction pipeline☆70Updated this week
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆93Updated 2 weeks ago