Alternatives and similar repositories for DeeProtGO

Users that are interested in DeeProtGO are comparing it to the libraries listed below

• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated 5 months ago
• maslov-group / DR-BERT
  ☆24Updated 2 years ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆37Updated 2 years ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆32Updated last year
• tristanic / pae_to_domains
  Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
  ☆35Updated 2 years ago
• amyxlu / CPCProt
  Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.
  ☆29Updated 4 years ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆52Updated 8 months ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆53Updated 6 months ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆32Updated 7 months ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆72Updated last year
• BioColLab / PFresGO
  ☆21Updated last year
• yanzhanglab / Graph2GO
  Graph-based representation learning method for protein function prediction
  ☆24Updated 4 years ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆47Updated 8 months ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• sokrypton / seqmodels
  ☆31Updated 4 years ago
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆40Updated last year
• kansil / PROBE
  Trainable representation analysis study repository
  ☆43Updated 3 years ago
• bio-ontology-research-group / deepgozero
  DeepGO with Fuzzy DL
  ☆30Updated 2 years ago
• AstraZeneca / StarGazer
  StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…
  ☆35Updated last year
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• Rostlab / goPredSim
  ☆47Updated 7 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆26Updated last year
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆46Updated 3 weeks ago
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆42Updated 3 years ago
• oxpig / saab_plus
  ☆25Updated 5 years ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆30Updated 3 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆89Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago