Alternatives and similar repositories for efficient-evolution

Users that are interested in efficient-evolution are comparing it to the libraries listed below

• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆200Updated 4 months ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆163Updated 2 years ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆153Updated 7 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆158Updated last year
• varun-shanker / structural-evolution
  ☆113Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆129Updated 3 years ago
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆235Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆318Updated 10 months ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆268Updated 8 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆146Updated 4 months ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆147Updated last year
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆119Updated 2 years ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆105Updated 3 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆233Updated 2 weeks ago
• RosettaCommons / RFantibody
  ☆275Updated 5 months ago
• gjoni / trDesign
  trRosetta for protein design
  ☆182Updated 4 years ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆156Updated 4 months ago
• mat10d / EvolvePro
  This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…
  ☆286Updated 3 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆298Updated last month
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆163Updated last year
• uw-ipd / RoseTTAFold2
  ☆198Updated 4 months ago
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆264Updated last year
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆160Updated last year
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆371Updated 2 years ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆267Updated 2 years ago
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆320Updated last month
• microsoft / protein-sequence-models
  ☆251Updated last year
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆195Updated 7 months ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆276Updated last week
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆110Updated last year