Alternatives and similar repositories for efficient-evolution

Users that are interested in efficient-evolution are comparing it to the libraries listed below

• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆170Updated 2 years ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆225Updated 8 months ago
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆262Updated last year
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆171Updated 2 months ago
• varun-shanker / structural-evolution
  ☆122Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆133Updated 4 years ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆167Updated 3 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆157Updated 2 years ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆151Updated 9 months ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆326Updated last year
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆115Updated 8 months ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆131Updated 2 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆183Updated 4 years ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆261Updated last month
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆297Updated last year
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆146Updated last month
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆168Updated last year
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆174Updated this week
• uw-ipd / RoseTTAFold2
  ☆208Updated 9 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆166Updated last year
• RosettaCommons / RFantibody
  ☆432Updated last week
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆296Updated 3 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆142Updated 10 months ago
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆272Updated last year
• biolists / folding_tools
  A collection of *fold* tools
  ☆302Updated 5 months ago
• wallnerlab / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆360Updated 3 months ago
• mat10d / EvolvePro
  This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…
  ☆329Updated 7 months ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆277Updated 2 years ago
• microsoft / protein-sequence-models
  ☆255Updated last year
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆173Updated 4 months ago