Alternatives and similar repositories for paccmann_proteomics

Users that are interested in paccmann_proteomics are comparing it to the libraries listed below

• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated last year
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆59Updated 2 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆59Updated 10 months ago
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆72Updated 4 years ago
• eliberis / parapred
  Paratope Prediction using Deep Learning
  ☆59Updated 2 years ago
• dahjan / DMS_opt
  ☆68Updated 4 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆109Updated 3 years ago
• MartinThoma / propy3
  A Python 3 version of the protein descriptor package propy
  ☆42Updated 2 years ago
• zswitten / Antimicrobial-Peptides
  Collecting AMP MIC data from different sources, then running a GAN to output promising sequences
  ☆78Updated 10 months ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆87Updated last year
• Tessier-Lab-UMich / Emi_Pareto_Opt_ML
  ☆20Updated 2 years ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆41Updated last year
• Liuxg16 / GeoPPI
  ☆86Updated 2 years ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆56Updated 5 months ago
• psipred / DeepCov
  Fully convolutional neural networks for protein residue-residue contact prediction
  ☆44Updated 6 years ago
• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆54Updated 2 years ago
• rmrao / evo
  Mono-repo for protein utilities.
  ☆18Updated 3 years ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆103Updated last year
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆115Updated 3 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆102Updated 3 years ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆62Updated 3 years ago
• alex-hh / deep-protein-generation
  ☆58Updated 2 years ago
• fhalab / SPGen
  ☆19Updated 4 years ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆53Updated 3 years ago
• yarongef / DistilProtBert
  DistilProtBert implementation, a distilled version of ProtBert model.
  ☆15Updated 2 years ago
• alchemab / parapred-pytorch
  PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
  ☆20Updated last year
• aqlaboratory / rgn2
  ☆106Updated last year
• tadorfer / protlearn
  A Python package for extracting protein sequence features
  ☆59Updated 2 years ago
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆27Updated 4 years ago