PaccMann / paccmann_proteomics
PaccMann models for protein language modeling
☆41Updated 3 years ago
Alternatives and similar repositories for paccmann_proteomics:
Users that are interested in paccmann_proteomics are comparing it to the libraries listed below
- Public repository describing training and testing of AntiBERTa.☆57Updated last year
- Paratope Prediction using Deep Learning☆59Updated last year
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated 10 months ago
- ☆108Updated 2 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆99Updated 3 years ago
- ☆20Updated 2 years ago
- A Python 3 version of the protein descriptor package propy☆39Updated 2 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 6 months ago
- ☆78Updated 2 years ago
- ☆18Updated 4 years ago
- ☆68Updated 4 years ago
- ☆34Updated 3 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆83Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated 9 months ago
- Repository for publicly available deep learning models developed in Rosetta community☆111Updated 3 years ago
- Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction☆32Updated 4 years ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆18Updated last year
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Updated 5 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆59Updated 9 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆34Updated last year
- Protein sequence classification with self-supervised pretraining☆83Updated 3 years ago
- Mono-repo for protein utilities.☆17Updated 3 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 4 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆80Updated last year
- AbLang: A language model for antibodies☆134Updated last year
- Protein design and variant prediction using autoregressive generative models