FunctionLab / sei-framework
code to run sei and obtain sei and sequence class predictions
☆97Updated 2 years ago
Alternatives and similar repositories for sei-framework:
Users that are interested in sei-framework are comparing it to the libraries listed below
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆69Updated 7 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆67Updated this week
- Computational Optimization of DNA Activity (CODA)☆55Updated last month
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated 9 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆67Updated 7 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆56Updated last year
- ☆26Updated 2 weeks ago
- deep learning-inspired explainable sequence model for transcription initiation☆93Updated 3 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆16Updated last month
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆35Updated 2 months ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆53Updated this week
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆140Updated last week
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆76Updated 2 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆47Updated 2 weeks ago
- ☆37Updated 2 years ago
- RNA-seq prediction with deep convolutional neural networks.☆121Updated 2 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- Predicting gene expression levels from genomic sequences☆51Updated 4 years ago
- predicting expression effects of human genome variants ab initio from sequence☆125Updated 2 weeks ago
- Tools for working with BUS files☆93Updated 3 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆65Updated 2 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆35Updated 3 weeks ago
- ☆25Updated 8 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆91Updated 6 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆36Updated this week
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆32Updated 7 months ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆99Updated 3 weeks ago
- ☆51Updated last year
- ☆64Updated last year
- ☆72Updated 2 years ago