paprica - PAthway PRediction by phylogenetIC plAcement
☆32Jun 2, 2026Updated 4 months ago
Alternatives and similar repositories for paprica
Users that are interested in paprica are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- ☆24May 6, 2020Updated 6 years ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆15Aug 20, 2025Updated last year
- General procedure for making QIIME 2 compatible SILVA reference files☆20Oct 3, 2024Updated 2 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Collection of commonly used RDP Tools for easy building☆53Jun 8, 2023Updated 3 years ago
- ☆44Nov 20, 2017Updated 8 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 4 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- t-distributed stochastic neighbor embedding for microbiota data☆13May 12, 2019Updated 7 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆41Jul 12, 2021Updated 5 years ago
- ☆23May 16, 2020Updated 6 years ago
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 3 years ago
- ☆16Sep 28, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python package for common tasks in bioinformatic.☆11Sep 24, 2025Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆87Sep 15, 2026Updated 3 weeks ago
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Nov 26, 2015Updated 10 years ago
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆54Jan 12, 2026Updated 9 months ago
- PASTA (Practical Alignment using SATe and Transitivity)☆97Jun 5, 2025Updated last year
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆22Mar 17, 2021Updated 5 years ago
- diversity estimation under ecological networks☆83Jun 16, 2026Updated 3 months ago
- ☆21Oct 6, 2026Updated last week
- Processing support for Greengenes2☆15Jul 31, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 5 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆396Sep 25, 2026Updated 2 weeks ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆234Aug 12, 2026Updated 2 months ago
- Accurate quality filtering of metagenomic amplicon sequences☆12Aug 26, 2019Updated 7 years ago
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 7 months ago
- Repo for course Tools for complex data analysis☆11Jul 15, 2024Updated 2 years ago
- Mapping-Assisted Targeted-Assembly for Metagenomics☆27Mar 28, 2025Updated last year
- ☆12Apr 6, 2021Updated 5 years ago
- Species richness with high diversity☆69Jun 25, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆66Apr 14, 2026Updated 5 months ago
- k-mer Counter based on Multiple Burst Trees (multi-threaded)☆13Aug 31, 2016Updated 10 years ago
- A pipeline for the identification of fungi in public metagenomics datasets☆18Nov 23, 2020Updated 5 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolk…☆17Jan 16, 2025Updated last year
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆19May 11, 2026Updated 5 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 5 months ago