bowmanjeffs / paprica
paprica - PAthway PRediction by phylogenetIC plAcement
☆29Updated last year
Alternatives and similar repositories for paprica
Users that are interested in paprica are comparing it to the libraries listed below
Sorting:
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆81Updated 9 years ago
- Estimate metagenomic coverage and sequence diversity☆52Updated 9 months ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆9Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- GraftM - Rapid community profiles from metagenomes☆45Updated 10 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆73Updated 2 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 11 months ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 3 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆35Updated 2 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 6 months ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- BEAV: Bacterial Element Annotation reVamped☆65Updated 6 months ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- ☆17Updated 2 years ago
- ☆28Updated last year
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated 3 weeks ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated this week
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆65Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- ☆50Updated last year
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- ☆41Updated 9 months ago