EESI / themetagenomicsLinks
☆24Updated 5 years ago
Alternatives and similar repositories for themetagenomics
Users that are interested in themetagenomics are comparing it to the libraries listed below
Sorting:
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 7 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- compositional data analysis toolbox☆60Updated 2 years ago
- A very simple BLAST filtering pipeline☆18Updated 11 years ago
- tidyMicro GitHup Repository☆21Updated 4 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 4 months ago
- functions for analyzing phyloseq data☆28Updated 10 months ago
- Reconstruction of transmission trees using genomic data☆68Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Updated 2 years ago
- Miscellaneous functions for metagenomic analysis.☆51Updated last month
- Speedy versions of phyloseq functions☆48Updated last year
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Updated 9 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Tools for visualising microbial community amplicon data☆70Updated last month
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- The Microbiome Interpretable Temporal Rule Engine☆46Updated 4 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year