EESI / themetagenomics
☆23Updated 4 years ago
Related projects: ⓘ
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated last year
- Workshop for NGS'18 conference, Barcelona 2018☆25Updated 5 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆28Updated last year
- A comprehensive and customizable R package for microbiome analysis.☆20Updated last year
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆14Updated 6 months ago
- Development version of the biom package for R☆24Updated 3 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 3 months ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Updated 5 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆33Updated 5 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 3 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 5 months ago
- ☆26Updated 6 months ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆14Updated 4 months ago
- Simple R utilities for working with HMMER☆18Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆20Updated 7 months ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆17Updated 7 years ago
- SHallow shOtGUN profiler☆54Updated 2 years ago
- Implementation of Krona to QIIME2☆14Updated 6 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated last year
- ☆13Updated 11 months ago
- Analysis of Composition of Microbiomes☆11Updated 8 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 2 years ago
- ☆13Updated this week
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆35Updated 8 years ago
- A very simple BLAST filtering pipeline☆18Updated 10 years ago
- ☆43Updated 7 years ago