EESI / themetagenomicsLinks
☆24Updated 5 years ago
Alternatives and similar repositories for themetagenomics
Users that are interested in themetagenomics are comparing it to the libraries listed below
Sorting:
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 7 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 4 months ago
- tidyMicro GitHup Repository☆21Updated 4 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- ☆35Updated 2 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- Perform microbiome-wide association studies with a variety of models☆18Updated 8 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- R shiny app for interactive microbiome analysis☆56Updated 7 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- A very simple BLAST filtering pipeline☆19Updated 11 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last week
- Tools for visualising microbial community amplicon data☆70Updated 2 months ago
- ☆28Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- diversity estimation under ecological networks☆83Updated 5 months ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Updated 2 years ago
- accessory functions for processing microbial community data☆12Updated 3 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated last year