t-distributed stochastic neighbor embedding for microbiota data
☆13May 12, 2019Updated 7 years ago
Alternatives and similar repositories for tsnemicrobiota
Users that are interested in tsnemicrobiota are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- A set of R functions that help faciliate a lot of tedious processing☆19Aug 31, 2018Updated 8 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 6 years ago
- Programs and documentation for the SAMSA pipeline, version 1.0☆16Dec 16, 2019Updated 6 years ago
- an example of building up a targets analysis for -omics data☆12Jun 23, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 4 years ago
- A user-friendly tool for quality control and interactive analysis of microbiome data☆10Jan 9, 2025Updated last year
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆29Feb 6, 2023Updated 3 years ago
- In-silico PCR amplification on complete genomes☆11Oct 19, 2026Updated last week
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated 2 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- microbiome R package☆320Updated this week
- A Visual Analytics Tool for Pangenomic Variant Analysis☆12Jun 23, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Jul 14, 2024Updated 2 years ago
- Repository of script tools, examples, and contributed code for using the MG-RAST API☆25Mar 22, 2021Updated 5 years ago
- ggplots for nested data☆10Jul 17, 2024Updated 2 years ago
- ☆16Sep 2, 2026Updated last month
- Data Cube Training Course Materials☆14Apr 2, 2024Updated 2 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- An automated assembly pipeline for microbial genomes☆19Aug 26, 2026Updated 2 months ago
- Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.☆20Nov 15, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This repository contains all CWL descriptions of the MGnify pipeline version 5.0.☆24Apr 21, 2026Updated 6 months ago
- MIX: Combining multiple assemblies from NGS data☆13Apr 14, 2016Updated 10 years ago
- Connect Siemens S7 to Mqtt with Homeassistant discovery support☆24Jun 27, 2026Updated 4 months ago
- piano - An R/Bioconductor package for gene set analysis☆14Sep 13, 2022Updated 4 years ago
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 8 years ago
- ☆12Oct 3, 2023Updated 3 years ago
- This R package is used to calculate CO2 and CH4 gas fluxes measured with static chamber method. It provide a easy way to calculate multip…☆11May 20, 2021Updated 5 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated last year
- ☆18Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An interactive Solara web app for visualizing geospatial data☆26Jun 3, 2024Updated 2 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 4 years ago
- MHC class II binding prediction☆16Dec 27, 2022Updated 3 years ago
- Speedy versions of phyloseq functions☆50Apr 21, 2024Updated 2 years ago
- learn how to build a personal website using Quarto☆17Aug 14, 2026Updated 2 months ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Aug 31, 2017Updated 9 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆27Aug 20, 2026Updated 2 months ago