Alternatives and similar repositories for cobramod:

Users that are interested in cobramod are comparing it to the libraries listed below

• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆22Updated 2 weeks ago
• AlmaasLab / BiGMeC
  BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor
  ☆14Updated last year
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆41Updated 2 weeks ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆25Updated last year
• opencobra / m_model_collection
  A collection of M models downloaded from published studies
  ☆16Updated 9 years ago
• rcolpo / pgp_reconstruction
  Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
  ☆12Updated last year
• segrelab / comets
  Computation of Microbial Ecosystems in Time and Space
  ☆22Updated 2 weeks ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• RamanLab / metquest
  Enumerating biosynthetic pathways in metabolic networks
  ☆12Updated last month
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated 2 years ago
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆25Updated 6 years ago
• latendre / PythonCyc
  ☆22Updated 4 years ago
• NPLinker / nplinker
  A python framework for microbial natural products data mining by integrating genomics and metabolomics data
  ☆18Updated this week
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆64Updated this week
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆59Updated last month
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆25Updated 2 months ago
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated 10 months ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆70Updated 5 months ago
• tamascogustavo / chimera
  Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.
  ☆17Updated 2 years ago
• Merck / bgc-pipeline
  ☆11Updated 3 months ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆46Updated 2 months ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last year
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆21Updated last week
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆51Updated 3 weeks ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆55Updated 4 years ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated last year
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆58Updated 7 months ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 5 years ago
• kelwyres / Bactabolize
  ☆38Updated 3 months ago