gavinmdouglas / FuncDivLinks
R package for computing alpha and beta contributional diversity metrics
☆10Updated 2 years ago
Alternatives and similar repositories for FuncDiv
Users that are interested in FuncDiv are comparing it to the libraries listed below
Sorting:
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated 2 weeks ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 7 months ago
- R package for microbial pangenomics☆24Updated 3 years ago
- ☆13Updated 5 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 4 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Updated 2 years ago
- Linear Decomposition Model☆25Updated 2 years ago
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆10Updated 3 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 3 weeks ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆10Updated 4 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- Working with the outputs of sourmash in R☆28Updated 2 years ago
- tidyMicro GitHup Repository☆21Updated 4 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 6 years ago
- Simple R utilities for working with HMMER☆19Updated last year
- Tools for analyzing trees☆13Updated 7 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- An easy way of MLSTyping your genomes in R.☆18Updated 4 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- ☆12Updated last year
- diversity estimation under ecological networks☆83Updated 4 months ago
- Tools for visualising microbial community amplicon data☆70Updated last month
- ☆28Updated last year
- functions for analyzing phyloseq data☆28Updated 10 months ago