donovan-h-parks / biolib
Python package for common tasks in bioinformatic.
☆13Updated last year
Alternatives and similar repositories for biolib:
Users that are interested in biolib are comparing it to the libraries listed below
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Strain Resolution ON Graphs☆47Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- strain-level analysis tools☆35Updated 5 months ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- ☆16Updated 4 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 3 months ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Updated 6 months ago
- ☆22Updated 2 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Find Unique genomic Regions☆29Updated this week
- OPAL: Open-community Profiling Assessment tooL☆28Updated 2 months ago
- ☆16Updated last year
- Detect contigs of complete circular genomes☆22Updated 5 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 3 weeks ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- ☆45Updated last year
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 4 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- ☆29Updated last year
- Estimate metagenomic coverage and sequence diversity☆48Updated 8 months ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- ☆23Updated 5 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 3 months ago