mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models
☆15Aug 20, 2025Updated 11 months ago
Alternatives and similar repositories for mergem
Users that are interested in mergem are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆26Feb 6, 2026Updated 6 months ago
- ☆24Oct 19, 2023Updated 2 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 3 years ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 26, 2026Updated 2 months ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆18May 11, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- agent based modelling☆39Aug 28, 2024Updated last year
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆219Jul 31, 2026Updated 2 weeks ago
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆70Updated this week
- Package that facilitates pulling database entries from KEGG via its REST API☆14Updated this week
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 2 months ago
- From annotated genomes to metabolic screening in large scale microbiotas☆77Jul 27, 2026Updated 2 weeks ago
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago
- A tool to search for gadgets, operations, and ROP chains using a backtracking algorithm in a tree-like structure☆19Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A simple python web app to visualise google location history☆16Jul 16, 2024Updated 2 years ago
- ☆15May 8, 2026Updated 3 months ago
- ReFramed: metabolic modeling package☆64Jun 26, 2026Updated last month
- ☆17Jan 12, 2026Updated 7 months ago
- A python implementation of flux balance analysis to model microbial metabolism☆28Feb 25, 2023Updated 3 years ago
- Graph Learning with JAX☆14Jul 11, 2022Updated 4 years ago
- The funny insult device for everyday use.☆16May 10, 2026Updated 3 months ago
- An OWL vocabulary to allow the serialization and exchanging of OntoUML models in conformance with the OntoUML Metamodel.☆13Updated this week
- Python package for building and analyzing models using ModelSEED☆31Feb 11, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fractional Brownian Motion package☆11Jun 24, 2022Updated 4 years ago
- paprica - PAthway PRediction by phylogenetIC plAcement☆32Jun 2, 2026Updated 2 months ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Oct 1, 2024Updated last year
- Repository for educational material related to the 2025 C-FORS Summer school in Oslo, Norway.☆18May 27, 2025Updated last year
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆273May 13, 2026Updated 3 months ago
- ☆17May 8, 2024Updated 2 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆74May 6, 2025Updated last year
- ☆16Oct 15, 2025Updated 10 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Jan 26, 2026Updated 6 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆85Updated this week
- Changelog & feature requests for IONOS Deploy Now☆18Jul 12, 2023Updated 3 years ago
- COnstraint Based Reconstruction and EXascale Analysis (in Julia)☆19Sep 26, 2025Updated 10 months ago
- Rebuild of AskOmics☆14Updated this week
- CarveMe: genome-scale metabolic model reconstruction☆216Sep 12, 2025Updated 11 months ago
- Basic Docker Compose template application with Flask, Celery, Redis, MySQL, SocketIO, Nginx and Gunicorn.☆16Nov 26, 2023Updated 2 years ago