A pipeline creation tool using Snakemake
☆14Oct 7, 2026Updated this week
Alternatives and similar repositories for pipemake
Users that are interested in pipemake are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 6 months ago
- que paquete☆10Jul 17, 2024Updated 2 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆13Mar 3, 2025Updated last year
- ☆13May 27, 2025Updated last year
- ☆18Aug 22, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 9 months ago
- Error correction of long reads☆16Jan 30, 2026Updated 8 months ago
- CNV Rapid Aberration Detection And Reporting☆13Mar 2, 2021Updated 5 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Oct 1, 2026Updated last week
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 10 months ago
- expressions on VCFs☆94Sep 25, 2026Updated 2 weeks ago
- Toy simulations and analyses of heritability and genetic differences☆11Jul 17, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Generic human DNA variant annotation pipeline☆59Aug 11, 2026Updated 2 months ago
- ☆35Jun 20, 2025Updated last year
- JTK -- a regional diploid genome assembler☆27Apr 22, 2026Updated 5 months ago
- ☆27Sep 17, 2026Updated 3 weeks ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆32Nov 25, 2024Updated last year
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 3 years ago
- mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate☆31Jan 26, 2026Updated 8 months ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆15May 16, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 10 months ago
- ☆13Dec 23, 2013Updated 12 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Tools for working with agp files☆20Jun 26, 2025Updated last year
- Tool for fully-automated inference of species trees from raw genome assemblies☆50Aug 25, 2026Updated last month
- Prepare XML input files for divergence-time estimation with SNAPP☆22Dec 3, 2022Updated 3 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Performs BLAST on compressed proteomic data.☆18Jun 15, 2015Updated 11 years ago
- Programming for Biology Class @ CSHL 2022☆14Oct 4, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- A CNN model to identify MEIs in WGS☆14Mar 4, 2025Updated last year
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 2 months ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆48Sep 18, 2026Updated 3 weeks ago
- A command-line interface for Sentieon pipelines☆17Updated this week
- SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.☆21Feb 23, 2025Updated last year