deepomicslab / SpecHLALinks
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
☆53Updated 3 months ago
Alternatives and similar repositories for SpecHLA
Users that are interested in SpecHLA are comparing it to the libraries listed below
Sorting:
- ☆60Updated 5 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last week
- SingleCell Nanopore sequencing data analysis☆63Updated 7 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- ☆64Updated 3 months ago
- ☆49Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 3 months ago
- ☆26Updated 6 years ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- ENCODE long read RNA-seq pipeline☆52Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last month
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆77Updated 2 months ago
- Comprehensive benchmark of structural variant callers☆48Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Tools for analyzing DNA methylation data☆44Updated this week
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 2 months ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Updated 9 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆69Updated 2 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆81Updated 11 months ago
- ☆22Updated last month
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆91Updated 2 months ago
- Burden testing against public controls☆50Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago