deepomicslab / SpecHLALinks
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
☆54Updated 3 months ago
Alternatives and similar repositories for SpecHLA
Users that are interested in SpecHLA are comparing it to the libraries listed below
Sorting:
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- ☆60Updated 6 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 3 weeks ago
- ☆49Updated 3 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- ☆26Updated 6 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Software for Quantifying Interspersed Repeat Expression☆65Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆80Updated 2 months ago
- ☆64Updated 4 months ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- Full-length transcriptome splicing and mutation analysis☆86Updated last year
- ⛏ HLA predictions from NGS shotgun data☆55Updated 8 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- New version of JACUSA -> 2.0☆30Updated 2 months ago
- ☆22Updated 2 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Burden testing against public controls☆50Updated last year
- ☆54Updated 3 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- Tools for analyzing DNA methylation data☆44Updated 3 weeks ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆70Updated 10 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆70Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 2 months ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago