Clinical-Genomics / BALSAMICLinks
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
☆47Updated this week
Alternatives and similar repositories for BALSAMIC
Users that are interested in BALSAMIC are comparing it to the libraries listed below
Sorting:
- Mutation Identification Pipeline. Read the latest documentation:☆45Updated last year
- TIDDIT - structural variant calling☆74Updated 3 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- QDNAseq package for Bioconductor☆50Updated 11 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 3 months ago
- Tumor Mutational Burden☆61Updated 10 months ago
- Concordance and contamination estimator for tumor–normal pairs☆60Updated 8 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- ☆46Updated 5 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- ☆21Updated this week
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- FusionInspector code☆57Updated last month
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 10 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆57Updated 3 months ago
- ☆39Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago