肿瘤突变负荷学习笔记（tumor mutation burden）
☆17Dec 10, 2019Updated 6 years ago
Alternatives and similar repositories for TMB
Users that are interested in TMB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆13Jul 23, 2026Updated 3 months ago
- A simplified pipeline for ctDNA sequencing data analysis☆38Sep 23, 2017Updated 9 years ago
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆127Oct 27, 2023Updated 3 years ago
- Tumor Mutational Burden☆65Mar 17, 2026Updated 7 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- scripts to automatically update ANNOVAR db☆20Nov 17, 2021Updated 4 years ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 9 years ago
- automatic update Clinvar db for ANNOVAR☆11Updated this week
- 使用Python的Flask框架开发Web项目的模板，规范代码约束，增加Swag，CURD、ORM等模板☆13Nov 22, 2024Updated last year
- ☆14Apr 22, 2021Updated 5 years ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆36Aug 9, 2019Updated 7 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 6 months ago
- Multiplex Primer Design☆21Oct 30, 2020Updated 6 years ago
- ThermoAlign: software for automated primer design☆27Apr 14, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 9 years ago
- ☆12Jan 29, 2020Updated 6 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆119Apr 2, 2025Updated last year
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Apr 20, 2021Updated 5 years ago
- ☆10Oct 13, 2026Updated 2 weeks ago
- ☆10Jan 21, 2023Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Sep 28, 2022Updated 4 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆14Nov 12, 2019Updated 6 years ago
- a lightweight bam file depth statistical tool☆163Jul 2, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆19Dec 28, 2022Updated 3 years ago
- Beginning of a textbook for shell skills for bioinformatics☆11Oct 7, 2025Updated last year
- ☆32Dec 6, 2017Updated 8 years ago
- an R package for ancestry analysis☆37Jan 9, 2019Updated 7 years ago
- ☆23Sep 4, 2018Updated 8 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Jul 31, 2022Updated 4 years ago
- Simple script to generate whole-genome coverage plots☆19Jun 23, 2015Updated 11 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- It's just a personal record for studying how to analysis TCGA data(expression+mutation+methylation+CNV)☆20Dec 28, 2016Updated 9 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆31Apr 5, 2025Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆44Aug 14, 2023Updated 3 years ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 6 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆23Oct 25, 2023Updated 3 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆154Apr 16, 2026Updated 6 months ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆129Apr 20, 2026Updated 6 months ago