fanyucai1 / TMBLinks
肿瘤突变负荷学习笔记(tumor mutation burden)
☆16Updated 5 years ago
Alternatives and similar repositories for TMB
Users that are interested in TMB are comparing it to the libraries listed below
Sorting:
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 3 years ago
- ☆26Updated last year
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- ☆25Updated 5 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last month
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Tumor Mutational Burden☆61Updated 2 months ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- Python package to annotate and visualize gene fusions.☆64Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- ⛏ HLA predictions from NGS shotgun data☆54Updated 4 months ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Updated 8 years ago
- Fork of the Polysolver project☆33Updated 5 years ago
- ☆18Updated 4 years ago
- ☆19Updated 7 years ago
- Somatic point mutation caller☆17Updated 9 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- ☆53Updated 2 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆37Updated 8 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago