肿瘤突变负荷学习笔记(tumor mutation burden)
☆16Dec 10, 2019Updated 6 years ago
Alternatives and similar repositories for TMB
Users that are interested in TMB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A simplified pipeline for ctDNA sequencing data analysis☆38Sep 23, 2017Updated 8 years ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Feb 3, 2026Updated 4 months ago
- Tumor Mutational Burden☆66Mar 17, 2026Updated 2 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- scripts to automatically update ANNOVAR db☆19Nov 17, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆127Oct 27, 2023Updated 2 years ago
- ☆13Apr 22, 2021Updated 5 years ago
- ☆12Jan 29, 2020Updated 6 years ago
- automatic update Clinvar db for ANNOVAR☆10Jun 1, 2026Updated last week
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- ThermoAlign: software for automated primer design☆27Apr 14, 2018Updated 8 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated last month
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆36Aug 9, 2019Updated 6 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Apr 20, 2021Updated 5 years ago
- Command line tools for CMDB varaints browser☆23May 14, 2024Updated 2 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 8 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆152Apr 16, 2026Updated last month
- ☆10Jul 13, 2022Updated 3 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆129Apr 20, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Gene fusion detection and visualization☆132Feb 21, 2022Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆43Aug 14, 2023Updated 2 years ago
- ☆23Sep 4, 2018Updated 7 years ago
- ☆32Dec 6, 2017Updated 8 years ago
- Beginning of a textbook for shell skills for bioinformatics☆11Oct 7, 2025Updated 8 months ago
- an R package for ancestry analysis☆37Jan 9, 2019Updated 7 years ago
- ☆30Apr 5, 2025Updated last year
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Jul 31, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆23Oct 25, 2023Updated 2 years ago
- Simple script to generate whole-genome coverage plots☆19Jun 23, 2015Updated 10 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 5 years ago
- A pipeline creation tool using Snakemake☆13Updated this week
- Molecular Oncology Almanac, a clinical interpretation algorithm paired with a novel underlying knowledge base for precision cancer medici…☆41May 20, 2026Updated 3 weeks ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago