fanyucai1 / TMB
肿瘤突变负荷学习笔记(tumor mutation burden)
☆16Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for TMB
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆21Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- ☆25Updated 8 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆45Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆29Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆33Updated 4 months ago
- ☆22Updated 3 months ago
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆30Updated 3 years ago
- ☆13Updated 7 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆28Updated 6 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆18Updated 3 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆18Updated 5 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- cnv-seq with custom bugfix☆11Updated 11 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- Codes and Data for FFPEsig manuscript☆15Updated 10 months ago
- ☆18Updated 6 years ago
- Tumor Mutational Burden☆55Updated 2 months ago
- Clonality inference in multiple tumor samples using phylogeny☆13Updated 7 years ago
- Somatic point mutation caller☆25Updated last week
- ☆45Updated 5 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- BIC@MSKCC Variants Pipeline☆23Updated last year
- CNV detection tool for targeted NGS panel data☆16Updated 2 years ago