fanyucai1 / TMBLinks
肿瘤突变负荷学习笔记（tumor mutation burden）
☆16Updated 5 years ago
Alternatives and similar repositories for TMB
Users that are interested in TMB are comparing it to the libraries listed below
Sorting:
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Fork of the Polysolver project☆31Updated 5 years ago
- ☆24Updated 11 months ago
- Tumor Mutational Burden☆61Updated 10 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year
- ☆19Updated 7 years ago
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Updated 4 years ago
- BIC@MSKCC Variants Pipeline☆24Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 3 months ago
- Analysis pipelines for cancer genome sequencing in mice.☆21Updated 11 months ago
- ☆18Updated 3 years ago
- QDNAseq package for Bioconductor☆50Updated 11 months ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆37Updated 7 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆20Updated 6 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago