肿瘤突变负荷学习笔记（tumor mutation burden）
☆16Dec 10, 2019Updated 6 years ago
Alternatives and similar repositories for TMB
Users that are interested in TMB are comparing it to the libraries listed below
Sorting:
- A simplified pipeline for ctDNA sequencing data analysis☆37Sep 23, 2017Updated 8 years ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Feb 3, 2026Updated last month
- Tumor Mutational Burden☆65Feb 17, 2026Updated 2 weeks ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆35Aug 9, 2019Updated 6 years ago
- scripts to automatically update ANNOVAR db☆18Nov 17, 2021Updated 4 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- Command line tools for CMDB varaints browser☆23May 14, 2024Updated last year
- ☆10Jan 21, 2023Updated 3 years ago
- automatic update Clinvar db for ANNOVAR☆10Updated this week
- ☆10Jul 13, 2022Updated 3 years ago
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆126Oct 27, 2023Updated 2 years ago
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Apr 20, 2021Updated 4 years ago
- ☆13Apr 22, 2021Updated 4 years ago
- A pipeline creation tool using Snakemake☆12Feb 20, 2026Updated last week
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆13Oct 7, 2025Updated 4 months ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- ☆12Jan 29, 2020Updated 6 years ago
- ☆28Apr 5, 2025Updated 10 months ago
- ThermoAlign: software for automated primer design☆27Apr 14, 2018Updated 7 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Jul 31, 2022Updated 3 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- Beginning of a textbook for shell skills for bioinformatics☆11Oct 7, 2025Updated 4 months ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆28Mar 18, 2022Updated 3 years ago
- Gene fusion detection and visualization☆131Feb 21, 2022Updated 4 years ago
- ☆32Dec 6, 2017Updated 8 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Sep 9, 2025Updated 5 months ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Molecular Oncology Almanac, a clinical interpretation algorithm paired with a novel underlying knowledge base for precision cancer medici…☆17Feb 2, 2026Updated last month
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆128Sep 3, 2019Updated 6 years ago
- an R package for ancestry analysis☆37Jan 9, 2019Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Aug 14, 2023Updated 2 years ago
- A mosaic detecting software based on phasing and random forest☆70Dec 8, 2025Updated 2 months ago
- ☆16Sep 21, 2021Updated 4 years ago
- MFEprimer-2.0: A fast thermodynamics-based program for checking PCR primer specificity☆41Feb 16, 2021Updated 5 years ago
- ☆18Apr 18, 2024Updated last year