borenstein-lab / microbiome-metabolome-curated-data

Related projects: ⓘ

• victoriapascal / gutsmash
  gutSMASH
  ☆51Updated 4 months ago
• zhouhj1994 / LinDA
  ☆35Updated 9 months ago
• twbattaglia / MicrobeDS
  A repository for large-scale microbiome datasets, formatted for phyloseq
  ☆31Updated 5 months ago
• blekhmanlab / host_gene_microbiome_interactions
  Analysis framework for integrating gut microbiome and host gene expression data
  ☆31Updated 2 years ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆25Updated 5 years ago
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆26Updated 2 years ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆22Updated last year
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated 11 months ago
• FrederickHuangLin / ANCOM-BC-Code-Archive
  Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …
  ☆29Updated 3 years ago
• GRONINGEN-MICROBIOME-CENTRE / Groningen-Microbiome
  Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…
  ☆50Updated 3 months ago
• jaeyunsung / GMHI_2020
  Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…
  ☆30Updated 3 years ago
• EvaYiwenWang / PLSDAbatch_workflow
  ☆17Updated last year
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆52Updated 3 weeks ago
• Gibbons-Lab / isb_course_2020
  Materials and tutorials for the 2020 ISB Microbiome Course
  ☆30Updated last year
• nearinj / Comparison_of_DA_microbiome_methods
  ☆53Updated 6 months ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆33Updated 5 months ago
• cafferychen777 / MicrobiomeStat
  Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
  ☆31Updated this week
• biovcnet / topic-metagenomics
  A repository for the lessons and notebooks used for Binder tutorials
  ☆18Updated 4 years ago
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆18Updated last year
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆55Updated this week
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated 5 months ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• jiaonall / CRC-multi-kingdom
  This is the supplementary code for CRC-multi-kingdom
  ☆16Updated 2 years ago
• knightlab-analyses / reference-frames
  ☆21Updated 4 years ago
• segalab / SGVFinder
  ☆29Updated last year
• PriceLab / ShannonMets
  ** Blood metabolome predicts gut microbiome α-diversity in humans**
  ☆24Updated 4 years ago
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆10Updated last month
• gavinmdouglas / picrust2_manuscript
  ☆20Updated 4 years ago
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆26Updated last year
• jlugomar / longitudinal_microbiome_analysis_public
  ☆16Updated 3 years ago