☆19Dec 16, 2024Updated last year
Alternatives and similar repositories for mimosa2
Users that are interested in mimosa2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Model-based Integration of Metabolite Observations and Species Abundances☆26Feb 21, 2020Updated 6 years ago
- Conversion software tool for producing both annotation and tree files for GraPhlAn☆11Feb 2, 2022Updated 4 years ago
- ☆21Dec 15, 2020Updated 5 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆152Jul 11, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆26Jun 9, 2021Updated 5 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆168Apr 23, 2025Updated last year
- ☆20Aug 10, 2022Updated 4 years ago
- pathway based data integration and visualization☆51Mar 28, 2025Updated last year
- MetNormalizer is used to normalize large scale metabolomics data.☆22Mar 3, 2021Updated 5 years ago
- Kraken(2) database based on the GTDB project☆28Dec 20, 2018Updated 7 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆250Jul 10, 2026Updated last month
- ☆24Sep 25, 2025Updated 10 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆396Nov 27, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆16Jun 2, 2021Updated 5 years ago
- Enumerating biosynthetic pathways in metabolic networks☆13Feb 5, 2025Updated last year
- A snakemake workflow for metagenomic projects☆15Feb 16, 2023Updated 3 years ago
- Time-Course Multi-Omics data integration☆26Apr 9, 2024Updated 2 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆143Apr 27, 2026Updated 3 months ago
- Neural networks for microbe-metabolite interaction analysis☆133Nov 4, 2022Updated 3 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆26Updated this week
- ☆16Updated this week
- DAS Tool☆177May 2, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- wrapper functions to use ggstatsplot functions as a module in jamovi☆11Aug 3, 2026Updated last week
- Convert GTDB taxonomy to NCBI taxdump format☆78Aug 24, 2023Updated 2 years ago
- Added functions for Echidna in R☆11Apr 14, 2023Updated 3 years ago
- A visualization tool for Systems-Level Interactive Data Exploration☆12Jan 12, 2022Updated 4 years ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- Statistical analysis for sparse high-throughput sequencing☆75Dec 17, 2024Updated last year
- R and python scripts for correlation-based network analysis☆61May 17, 2020Updated 6 years ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Snakemake-based pipeline for gene mapping in Triticeae.☆11Mar 5, 2022Updated 4 years ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Apr 23, 2020Updated 6 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆475Jul 28, 2023Updated 3 years ago
- ☆11Jun 26, 2020Updated 6 years ago
- ☆85Sep 13, 2023Updated 2 years ago
- Microbial ecological network visualization clustering☆154Nov 20, 2025Updated 8 months ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10May 14, 2026Updated 3 months ago