borenstein-lab / mimosa2Links
☆13Updated last year
Alternatives and similar repositories for mimosa2
Users that are interested in mimosa2 are comparing it to the libraries listed below
Sorting:
- A shiny package for microbiome functional enrichment analysis☆38Updated last week
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Updated 3 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆38Updated 3 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆46Updated this week
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- A microbiome analysis toolkit for R☆25Updated 2 years ago
- R implementation of the LEfSe method☆63Updated last month
- Transform files to the microtable object with microeco package☆28Updated last month
- ☆42Updated 8 years ago
- A general metagenomics data mining system focus on robust microbiome research☆59Updated last year
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 6 months ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆31Updated 6 years ago
- ☆32Updated 2 years ago
- R package for downstream Microbiome analysis☆31Updated last year
- ☆58Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- gutSMASH☆55Updated 2 months ago
- Course material for the metagenomics course☆47Updated 3 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 5 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆59Updated 6 months ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Updated 3 years ago
- SourceTracker2☆82Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆50Updated last month
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆57Updated last year