caporaso-lab / longitudinal-notebooksLinks
☆12Updated 6 years ago
Alternatives and similar repositories for longitudinal-notebooks
Users that are interested in longitudinal-notebooks are comparing it to the libraries listed below
Sorting:
- Pairwise multilevel comparison using adonis☆80Updated 2 years ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆34Updated 6 years ago
- R and python scripts for correlation-based network analysis☆62Updated 5 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated last month
- Various functions for analysis of microbial community data☆47Updated 2 months ago
- R scripts for performing co-occurrence analyses☆35Updated 10 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Species richness with high diversity☆68Updated 4 months ago
- Transform files to the microtable object with microeco package☆28Updated last month
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- ☆20Updated 5 years ago
- diversity estimation under ecological networks☆83Updated 4 months ago
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- Miscellaneous functions for metagenomic analysis.☆51Updated last month
- ☆12Updated 4 years ago
- JAMP - Just Another Metabarcoding Pipeline☆37Updated 3 years ago
- Look Up Guild Information for Fungi in R☆22Updated 8 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Workshop materials for SFSU SCIP 2022.☆15Updated 3 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆126Updated 3 months ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆23Updated 5 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated 2 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- R package for downstream analysis for anacapa eDNA pipeline☆22Updated 4 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆20Updated 2 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆17Updated 4 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year