Alternatives and similar repositories for DeepMicro

Users that are interested in DeepMicro are comparing it to the libraries listed below

• borenstein-lab / microbiome-metabolome-curated-data
  ☆74Updated 11 months ago
• knights-lab / MLRepo
  ☆37Updated 3 years ago
• SchlossLab / Topcuoglu_ML_mBio_2020
  Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
  ☆31Updated 5 years ago
• biocore / mmvec
  Neural networks for microbe-metabolite interaction analysis
  ☆125Updated 2 years ago
• SegataLab / metaml
  ☆33Updated last year
• MicrobeLab / DeepMicrobes
  DeepMicrobes: taxonomic classification for metagenomics with deep learning
  ☆100Updated 3 years ago
• biocore / tcga
  Microbial analysis in TCGA data
  ☆91Updated last year
• widdowquinn / 2018-03-06-ibioic
  Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
  ☆20Updated 7 years ago
• scikit-bio / scikit-bio-tutorials
  Interactive tutorials for using scikit-bio in biological research
  ☆27Updated 2 months ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• twbattaglia / MicrobeDS
  A repository for large-scale microbiome datasets, formatted for phyloseq
  ☆38Updated last year
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• evolgeniusteam / GMrepoProgrammableAccess
  programmable access to GM repo
  ☆27Updated 2 years ago
• crazyhottommy / machine-learning-resource
  ☆83Updated 10 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• burstein-lab / genomic-nlp
  ☆26Updated last year
• PacktPublishing / Deep-Learning-for-Genomics-
  ☆34Updated 2 years ago
• YunxiaoRen / ML-iAMR
  ☆37Updated 2 years ago
• HadrienG / tutorials
  Various bioinformatics tutorials
  ☆61Updated 2 years ago
• waldronlab / curatedMetagenomicData
  Curated Metagenomic Data of the Human Microbiome
  ☆142Updated 2 weeks ago
• cduvallet / microbiomeHD
  Cross-disease comparison of case-control gut microbiome studies
  ☆67Updated 6 years ago
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆53Updated 2 years ago
• noambar / SerumMetabolomePredictions
  ☆21Updated 4 years ago
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆36Updated 7 years ago
• sib-swiss / statistics-and-machine-learning-training
  ☆28Updated 2 weeks ago
• HUST-NingKang-Lab / MGM
  MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.
  ☆35Updated 5 months ago
• knightlab-analyses / multiomic-cooccurrences
  ☆25Updated 5 years ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 6 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆52Updated 4 months ago
• dceoy / pdbio
  Pandas-based Data Handler for VCF, BED, and SAM Files
  ☆32Updated 3 years ago