minoh0201 / DeepMicroLinks
Deep representation learning for disease prediction based on microbiome data
☆59Updated 2 years ago
Alternatives and similar repositories for DeepMicro
Users that are interested in DeepMicro are comparing it to the libraries listed below
Sorting:
- ☆74Updated 9 months ago
- ☆37Updated 3 years ago
- Neural networks for microbe-metabolite interaction analysis☆121Updated 2 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆97Updated 2 years ago
- ☆33Updated 11 months ago
- ☆26Updated 11 months ago
- Interactive tutorials for using scikit-bio in biological research☆26Updated 3 weeks ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Updated 5 years ago
- Microbial analysis in TCGA data☆91Updated last year
- ☆26Updated 4 years ago
- Cross-disease comparison of case-control gut microbiome studies☆68Updated 6 years ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆38Updated last year
- Various bioinformatics tutorials☆61Updated last year
- ☆15Updated 5 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Fast and flexible ORF finder☆73Updated 3 years ago
- Curated Metagenomic Data of the Human Microbiome☆138Updated 3 weeks ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- ☆17Updated 4 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- ☆28Updated 4 months ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Updated 7 years ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- ☆35Updated 2 years ago
- ☆16Updated last week
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- a novel encoding method for viral identification in metagenomics☆15Updated last year
- ☆83Updated 8 months ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆32Updated 2 years ago